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RGAG4 (retrotransposon gag domain containing 4)

Identity

Alias_symbol (synonym)KIAA2001
Mar5
Mart5
Other alias6430402L03Rik
MAR5
MART5
HGNC (Hugo) RGAG4
LocusID (NCBI) 340526
Atlas_Id 72608
Location Xq13.1  [Link to chromosome band Xq13]
Location_base_pair Starts at 71346961 and ends at 71351751 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FOXP1 (3p13) / RGAG4 (Xq13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RGAG4   29430
Cards
Entrez_Gene (NCBI)RGAG4  340526  retrotransposon gag domain containing 4
Aliases6430402L03Rik; MAR5; MART5
GeneCards (Weizmann)RGAG4
Ensembl hg19 (Hinxton)ENSG00000242732 [Gene_View]  chrX:71346961-71351751 [Contig_View]  RGAG4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000242732 [Gene_View]  chrX:71346961-71351751 [Contig_View]  RGAG4 [Vega]
ICGC DataPortalENSG00000242732
TCGA cBioPortalRGAG4
AceView (NCBI)RGAG4
Genatlas (Paris)RGAG4
WikiGenes340526
SOURCE (Princeton)RGAG4
Genetics Home Reference (NIH)RGAG4
Genomic and cartography
GoldenPath hg19 (UCSC)RGAG4  -     chrX:71346961-71351751 -  Xq13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RGAG4  -     Xq13.1   [Description]    (hg38-Dec_2013)
EnsemblRGAG4 - Xq13.1 [CytoView hg19]  RGAG4 - Xq13.1 [CytoView hg38]
Mapping of homologs : NCBIRGAG4 [Mapview hg19]  RGAG4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB082532 AL359579 BC151224
RefSeq transcript (Entrez)NM_001024455
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_021352 NG_029583 NT_011651 NW_004929443
Consensus coding sequences : CCDS (NCBI)RGAG4
Cluster EST : UnigeneHs.512180 [ NCBI ]
CGAP (NCI)Hs.512180
Alternative Splicing GalleryENSG00000242732
Gene ExpressionRGAG4 [ NCBI-GEO ]   RGAG4 [ EBI - ARRAY_EXPRESS ]   RGAG4 [ SEEK ]   RGAG4 [ MEM ]
Gene Expression Viewer (FireBrowse)RGAG4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340526
GTEX Portal (Tissue expression)RGAG4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5HYW3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5HYW3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5HYW3
Splice isoforms : SwissVarQ5HYW3
PhosPhoSitePlusQ5HYW3
Domains : Interpro (EBI)Retrotrans_gag_dom   
Domain families : Pfam (Sanger)Retrotrans_gag (PF03732)   
Domain families : Pfam (NCBI)pfam03732   
Conserved Domain (NCBI)RGAG4
DMDM Disease mutations340526
Blocks (Seattle)RGAG4
SuperfamilyQ5HYW3
Human Protein AtlasENSG00000242732
Peptide AtlasQ5HYW3
HPRD18594
IPIIPI00168399   
Protein Interaction databases
DIP (DOE-UCLA)Q5HYW3
IntAct (EBI)Q5HYW3
FunCoupENSG00000242732
BioGRIDRGAG4
STRING (EMBL)RGAG4
ZODIACRGAG4
Ontologies - Pathways
QuickGOQ5HYW3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkRGAG4
Atlas of Cancer Signalling NetworkRGAG4
Wikipedia pathwaysRGAG4
Orthology - Evolution
OrthoDB340526
GeneTree (enSembl)ENSG00000242732
Phylogenetic Trees/Animal Genes : TreeFamRGAG4
HOVERGENQ5HYW3
HOGENOMQ5HYW3
Homologs : HomoloGeneRGAG4
Homology/Alignments : Family Browser (UCSC)RGAG4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRGAG4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RGAG4
dbVarRGAG4
ClinVarRGAG4
1000_GenomesRGAG4 
Exome Variant ServerRGAG4
ExAC (Exome Aggregation Consortium)RGAG4 (select the gene name)
Genetic variants : HAPMAP340526
Genomic Variants (DGV)RGAG4 [DGVbeta]
DECIPHER (Syndromes)X:71346961-71351751  ENSG00000242732
CONAN: Copy Number AnalysisRGAG4 
Mutations
ICGC Data PortalRGAG4 
TCGA Data PortalRGAG4 
Broad Tumor PortalRGAG4
OASIS PortalRGAG4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRGAG4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRGAG4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch RGAG4
DgiDB (Drug Gene Interaction Database)RGAG4
DoCM (Curated mutations)RGAG4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RGAG4 (select a term)
intoGenRGAG4
Cancer3DRGAG4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRGAG4
Genetic Testing Registry RGAG4
NextProtQ5HYW3 [Medical]
TSGene340526
GENETestsRGAG4
Huge Navigator RGAG4 [HugePedia]
snp3D : Map Gene to Disease340526
BioCentury BCIQRGAG4
ClinGenRGAG4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD340526
Chemical/Pharm GKB GenePA134992098
Clinical trialRGAG4
Miscellaneous
canSAR (ICR)RGAG4 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRGAG4
EVEXRGAG4
GoPubMedRGAG4
iHOPRGAG4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:40:58 CET 2017

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