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RGCC (regulator of cell cycle)

Identity

Alias_namesC13orf15
chromosome 13 open reading frame 15
Alias_symbol (synonym)bA157L14.2
RGC-32
RGC32
Other alias
HGNC (Hugo) RGCC
LocusID (NCBI) 28984
Atlas_Id 42096
Location 13q14.11  [Link to chromosome band 13q14]
Location_base_pair Starts at 42031542 and ends at 42045013 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RPL12 (9q33.3) / RGCC (13q14.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RGCC   20369
Cards
Entrez_Gene (NCBI)RGCC  28984  regulator of cell cycle
AliasesC13orf15; RGC-32; RGC32; bA157L14.2
GeneCards (Weizmann)RGCC
Ensembl hg19 (Hinxton)ENSG00000102760 [Gene_View]  chr13:42031542-42045013 [Contig_View]  RGCC [Vega]
Ensembl hg38 (Hinxton)ENSG00000102760 [Gene_View]  chr13:42031542-42045013 [Contig_View]  RGCC [Vega]
ICGC DataPortalENSG00000102760
TCGA cBioPortalRGCC
AceView (NCBI)RGCC
Genatlas (Paris)RGCC
WikiGenes28984
SOURCE (Princeton)RGCC
Genetics Home Reference (NIH)RGCC
Genomic and cartography
GoldenPath hg19 (UCSC)RGCC  -     chr13:42031542-42045013 +  13q14.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RGCC  -     13q14.11   [Description]    (hg38-Dec_2013)
EnsemblRGCC - 13q14.11 [CytoView hg19]  RGCC - 13q14.11 [CytoView hg38]
Mapping of homologs : NCBIRGCC [Mapview hg19]  RGCC [Mapview hg38]
OMIM610077   
Gene and transcription
Genbank (Entrez)AF036549 AK091099 AK095079 BC038706 BC066334
RefSeq transcript (Entrez)NM_014059
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_024524 NW_004929388
Consensus coding sequences : CCDS (NCBI)RGCC
Cluster EST : UnigeneHs.507866 [ NCBI ]
CGAP (NCI)Hs.507866
Alternative Splicing GalleryENSG00000102760
Gene ExpressionRGCC [ NCBI-GEO ]   RGCC [ EBI - ARRAY_EXPRESS ]   RGCC [ SEEK ]   RGCC [ MEM ]
Gene Expression Viewer (FireBrowse)RGCC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28984
GTEX Portal (Tissue expression)RGCC
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H4X1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H4X1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H4X1
Splice isoforms : SwissVarQ9H4X1
PhosPhoSitePlusQ9H4X1
Domains : Interpro (EBI)RGCC   
Domain families : Pfam (Sanger)RGCC (PF15151)   
Domain families : Pfam (NCBI)pfam15151   
Conserved Domain (NCBI)RGCC
DMDM Disease mutations28984
Blocks (Seattle)RGCC
SuperfamilyQ9H4X1
Human Protein AtlasENSG00000102760
Peptide AtlasQ9H4X1
HPRD17970
IPIIPI00022350   IPI00827579   
Protein Interaction databases
DIP (DOE-UCLA)Q9H4X1
IntAct (EBI)Q9H4X1
FunCoupENSG00000102760
BioGRIDRGCC
STRING (EMBL)RGCC
ZODIACRGCC
Ontologies - Pathways
QuickGOQ9H4X1
Ontology : AmiGOnegative regulation of exit from mitosis  negative regulation of endothelial cell proliferation  positive regulation of extracellular matrix constituent secretion  protein binding  nucleus  cytoplasm  centrosome  cytosol  complement activation  DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest  negative regulation of cell proliferation  positive regulation of gene expression  positive regulation of epithelial to mesenchymal transition  positive regulation of epithelial to mesenchymal transition  negative regulation of angiogenesis  protein kinase binding  protein kinase binding  protein kinase activator activity  positive regulation of cyclin-dependent protein serine/threonine kinase activity involved in G1/S transition of mitotic cell cycle  activation of protein kinase activity  positive regulation of collagen biosynthetic process  negative regulation of blood vessel endothelial cell migration  positive regulation of mitotic nuclear division  positive regulation of transcription from RNA polymerase II promoter  negative regulation of cytokine secretion  positive regulation of cytokine secretion  positive regulation of sequence-specific DNA binding transcription factor activity  positive regulation of stress fiber assembly  R-SMAD binding  positive regulation of cell cycle arrest  cellular response to hypoxia  mitotic cell cycle arrest  fibroblast activation  negative regulation of fibroblast growth factor production  positive regulation of extracellular matrix assembly  negative regulation of mitotic cell cycle phase transition  negative regulation of cell-cell adhesion mediated by cadherin  positive regulation of endothelial cell apoptotic process  positive regulation of DNA biosynthetic process  
Ontology : EGO-EBInegative regulation of exit from mitosis  negative regulation of endothelial cell proliferation  positive regulation of extracellular matrix constituent secretion  protein binding  nucleus  cytoplasm  centrosome  cytosol  complement activation  DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest  negative regulation of cell proliferation  positive regulation of gene expression  positive regulation of epithelial to mesenchymal transition  positive regulation of epithelial to mesenchymal transition  negative regulation of angiogenesis  protein kinase binding  protein kinase binding  protein kinase activator activity  positive regulation of cyclin-dependent protein serine/threonine kinase activity involved in G1/S transition of mitotic cell cycle  activation of protein kinase activity  positive regulation of collagen biosynthetic process  negative regulation of blood vessel endothelial cell migration  positive regulation of mitotic nuclear division  positive regulation of transcription from RNA polymerase II promoter  negative regulation of cytokine secretion  positive regulation of cytokine secretion  positive regulation of sequence-specific DNA binding transcription factor activity  positive regulation of stress fiber assembly  R-SMAD binding  positive regulation of cell cycle arrest  cellular response to hypoxia  mitotic cell cycle arrest  fibroblast activation  negative regulation of fibroblast growth factor production  positive regulation of extracellular matrix assembly  negative regulation of mitotic cell cycle phase transition  negative regulation of cell-cell adhesion mediated by cadherin  positive regulation of endothelial cell apoptotic process  positive regulation of DNA biosynthetic process  
NDEx NetworkRGCC
Atlas of Cancer Signalling NetworkRGCC
Wikipedia pathwaysRGCC
Orthology - Evolution
OrthoDB28984
GeneTree (enSembl)ENSG00000102760
Phylogenetic Trees/Animal Genes : TreeFamRGCC
HOVERGENQ9H4X1
HOGENOMQ9H4X1
Homologs : HomoloGeneRGCC
Homology/Alignments : Family Browser (UCSC)RGCC
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRGCC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RGCC
dbVarRGCC
ClinVarRGCC
1000_GenomesRGCC 
Exome Variant ServerRGCC
ExAC (Exome Aggregation Consortium)RGCC (select the gene name)
Genetic variants : HAPMAP28984
Genomic Variants (DGV)RGCC [DGVbeta]
DECIPHER (Syndromes)13:42031542-42045013  ENSG00000102760
CONAN: Copy Number AnalysisRGCC 
Mutations
ICGC Data PortalRGCC 
TCGA Data PortalRGCC 
Broad Tumor PortalRGCC
OASIS PortalRGCC [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRGCC
BioMutasearch RGCC
DgiDB (Drug Gene Interaction Database)RGCC
DoCM (Curated mutations)RGCC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RGCC (select a term)
intoGenRGCC
Cancer3DRGCC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610077   
Orphanet
MedgenRGCC
Genetic Testing Registry RGCC
NextProtQ9H4X1 [Medical]
TSGene28984
GENETestsRGCC
Huge Navigator RGCC [HugePedia]
snp3D : Map Gene to Disease28984
BioCentury BCIQRGCC
ClinGenRGCC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28984
Chemical/Pharm GKB GenePA134895181
Clinical trialRGCC
Miscellaneous
canSAR (ICR)RGCC (select the gene name)
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRGCC
EVEXRGCC
GoPubMedRGCC
iHOPRGCC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Mar 30 15:17:18 CEST 2017

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