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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome

Donate (in Euros)

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RGL3 (ral guanine nucleotide dissociation stimulator-like 3)


Other names-
HGNC (Hugo) RGL3
LocusID (NCBI) 57139
Location 19p13.2
Location_base_pair Starts at 11504732 and ends at 11530018 bp from pter ( according to hg19-Feb_2009)

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

HGNC (Hugo)RGL3   30282
Entrez_Gene (NCBI)RGL3  57139  ral guanine nucleotide dissociation stimulator-like 3
GeneCards (Weizmann)RGL3
Ensembl hg19 (Hinxton)ENSG00000205517 [Gene_View]  chr19:11504732-11530018 [Contig_View]  RGL3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000205517 [Gene_View]  chr19:11504732-11530018 [Contig_View]  RGL3 [Vega]
ICGC DataPortalENSG00000205517
AceView (NCBI)RGL3
Genatlas (Paris)RGL3
SOURCE (Princeton)RGL3
Genomic and cartography
GoldenPath hg19 (UCSC)RGL3  -     chr19:11504732-11530018 -  19p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RGL3  -     19p13.2   [Description]    (hg38-Dec_2013)
EnsemblRGL3 - 19p13.2 [CytoView hg19]  RGL3 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIRGL3 [Mapview hg19]  RGL3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057147 AK096811 AK126263 AK293404 AK298281
RefSeq transcript (Entrez)NM_001035223 NM_001161616
RefSeq genomic (Entrez)AC_000151 NC_000019 NC_018930 NT_011295 NW_001838483 NW_004929414
Consensus coding sequences : CCDS (NCBI)RGL3
Cluster EST : UnigeneHs.375142 [ NCBI ]
CGAP (NCI)Hs.375142
Alternative Splicing : Fast-db (Paris)GSHG0015513
Alternative Splicing GalleryENSG00000205517
Gene ExpressionRGL3 [ NCBI-GEO ]     RGL3 [ SEEK ]   RGL3 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3MIN7 (Uniprot)
NextProtQ3MIN7  [Medical]
With graphics : InterProQ3MIN7
Splice isoforms : SwissVarQ3MIN7 (Swissvar)
Domaine pattern : Prosite (Expaxy)RA (PS50200)    RASGEF (PS00720)    RASGEF_CAT (PS50009)    RASGEF_NTER (PS50212)   
Domains : Interpro (EBI)Ras-assoc    Ras-like_Gua-exchang_fac_N    Ras_G-nucl-exch_fac_CS    Ras_GEF_dom    RasGRF_CDC25    Ubiquitin-rel_dom   
Related proteins : CluSTrQ3MIN7
Domain families : Pfam (Sanger)RA (PF00788)    RasGEF (PF00617)    RasGEF_N (PF00618)   
Domain families : Pfam (NCBI)pfam00788    pfam00617    pfam00618   
Domain families : Smart (EMBL)RA (SM00314)  RasGEF (SM00147)  RasGEFN (SM00229)  
DMDM Disease mutations57139
Blocks (Seattle)Q3MIN7
Human Protein AtlasENSG00000205517
Peptide AtlasQ3MIN7
IPIIPI00643373   IPI00641225   IPI00908940   IPI00930050   IPI00747325   
Protein Interaction databases
IntAct (EBI)Q3MIN7
Ontologies - Pathways
Ontology : AmiGOintracellular  small GTPase mediated signal transduction  Ral guanyl-nucleotide exchange factor activity  Ras GTPase binding  positive regulation of Ral GTPase activity  
Ontology : EGO-EBIintracellular  small GTPase mediated signal transduction  Ral guanyl-nucleotide exchange factor activity  Ras GTPase binding  positive regulation of Ral GTPase activity  
Protein Interaction DatabaseRGL3
DoCM (Curated mutations)RGL3
Wikipedia pathwaysRGL3
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerRGL3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RGL3
Exome Variant ServerRGL3
SNP (GeneSNP Utah)RGL3
Genetic variants : HAPMAPRGL3
Genomic Variants (DGV)RGL3 [DGVbeta]
ICGC Data PortalENSG00000205517 
Somatic Mutations in Cancer : COSMICRGL3 
CONAN: Copy Number AnalysisRGL3 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
DECIPHER (Syndromes)19:11504732-11530018
Mutations and Diseases : HGMDRGL3
NextProtQ3MIN7 [Medical]
Disease Genetic AssociationRGL3
Huge Navigator RGL3 [HugePedia]  RGL3 [HugeCancerGEM]
snp3D : Map Gene to Disease57139
DGIdb (Drug Gene Interaction db)RGL3
General knowledge
Homologs : HomoloGeneRGL3
Homology/Alignments : Family Browser (UCSC)RGL3
Phylogenetic Trees/Animal Genes : TreeFamRGL3
Chemical/Protein Interactions : CTD57139
Chemical/Pharm GKB GenePA134979213
Clinical trialRGL3
Cancer Resource (Charite)ENSG00000205517
Other databases
PubMed6 Pubmed reference(s) in Entrez
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI


Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 14 18:18:30 CET 2015

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