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RGL3 (ral guanine nucleotide dissociation stimulator like 3)

Identity

HGNC (Hugo) RGL3
LocusID (NCBI) 57139
Atlas_Id 42097
Location 19p13.2
Location_base_pair Starts at 11504732 and ends at 11530018 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RGL3 (19p13.2) / ECSIT (19p13.2)RGL3 (19p13.2) / MALAT1 (11q13.1)RGL3 (19p13.2) / QPCT (2p22.2)
ZNF14 (19p13.11) / RGL3 (19p13.2)RGL3 19p13.2 / ECSIT 19p13.2ZNF14 19p13.11 / RGL3 19p13.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RGL3   30282
Cards
Entrez_Gene (NCBI)RGL3  57139  ral guanine nucleotide dissociation stimulator like 3
GeneCards (Weizmann)RGL3
Ensembl hg19 (Hinxton)ENSG00000205517 [Gene_View]  chr19:11504732-11530018 [Contig_View]  RGL3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000205517 [Gene_View]  chr19:11504732-11530018 [Contig_View]  RGL3 [Vega]
ICGC DataPortalENSG00000205517
TCGA cBioPortalRGL3
AceView (NCBI)RGL3
Genatlas (Paris)RGL3
WikiGenes57139
SOURCE (Princeton)RGL3
Genomic and cartography
GoldenPath hg19 (UCSC)RGL3  -     chr19:11504732-11530018 -  19p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RGL3  -     19p13.2   [Description]    (hg38-Dec_2013)
EnsemblRGL3 - 19p13.2 [CytoView hg19]  RGL3 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIRGL3 [Mapview hg19]  RGL3 [Mapview hg38]
OMIM616743   
Gene and transcription
Genbank (Entrez)AK057147 AK096811 AK126263 AK293404 AK298281
RefSeq transcript (Entrez)NM_001035223 NM_001161616
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929414
Consensus coding sequences : CCDS (NCBI)RGL3
Cluster EST : UnigeneHs.375142 [ NCBI ]
CGAP (NCI)Hs.375142
Alternative Splicing : Fast-db (Paris)GSHG0015513
Alternative Splicing GalleryENSG00000205517
Gene ExpressionRGL3 [ NCBI-GEO ]   RGL3 [ EBI - ARRAY_EXPRESS ]   RGL3 [ SEEK ]   RGL3 [ MEM ]
Gene Expression Viewer (FireBrowse)RGL3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)57139
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3MIN7 (Uniprot)
NextProtQ3MIN7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3MIN7
Splice isoforms : SwissVarQ3MIN7 (Swissvar)
PhosPhoSitePlusQ3MIN7
Domaine pattern : Prosite (Expaxy)RA (PS50200)    RASGEF (PS00720)    RASGEF_CAT (PS50009)    RASGEF_NTER (PS50212)   
Domains : Interpro (EBI)RA_dom    Ras-like_Gua-exchang_fac_N    Ras_G-nucl-exch_fac_CS    Ras_GEF_dom    RASGEF_cat_dom    RGL3    Ubiquitin-rel_dom   
Domain families : Pfam (Sanger)RA (PF00788)    RasGEF (PF00617)    RasGEF_N (PF00618)   
Domain families : Pfam (NCBI)pfam00788    pfam00617    pfam00618   
Domain families : Smart (EMBL)RA (SM00314)  RasGEF (SM00147)  RasGEFN (SM00229)  
DMDM Disease mutations57139
Blocks (Seattle)RGL3
SuperfamilyQ3MIN7
Human Protein AtlasENSG00000205517
Peptide AtlasQ3MIN7
IPIIPI00643373   IPI00641225   IPI00908940   IPI00930050   IPI00747325   
Protein Interaction databases
DIP (DOE-UCLA)Q3MIN7
IntAct (EBI)Q3MIN7
FunCoupENSG00000205517
BioGRIDRGL3
STRING (EMBL)RGL3
ZODIACRGL3
Ontologies - Pathways
QuickGOQ3MIN7
Ontology : AmiGOintracellular  small GTPase mediated signal transduction  Ral guanyl-nucleotide exchange factor activity  Ras GTPase binding  positive regulation of GTPase activity  
Ontology : EGO-EBIintracellular  small GTPase mediated signal transduction  Ral guanyl-nucleotide exchange factor activity  Ras GTPase binding  positive regulation of GTPase activity  
NDEx Network
Atlas of Cancer Signalling NetworkRGL3
Wikipedia pathwaysRGL3
Orthology - Evolution
OrthoDB57139
GeneTree (enSembl)ENSG00000205517
Phylogenetic Trees/Animal Genes : TreeFamRGL3
Homologs : HomoloGeneRGL3
Homology/Alignments : Family Browser (UCSC)RGL3
Gene fusions - Rearrangements
Fusion: TCGARGL3 19p13.2 ECSIT 19p13.2 BRCA
Fusion: TCGAZNF14 19p13.11 RGL3 19p13.2 BRCA
Polymorphisms : SNP, variants
NCBI Variation ViewerRGL3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RGL3
dbVarRGL3
ClinVarRGL3
1000_GenomesRGL3 
Exome Variant ServerRGL3
ExAC (Exome Aggregation Consortium)RGL3 (select the gene name)
SNP (GeneSNP Utah)RGL3
SNP : HGBaseRGL3
Genetic variants : HAPMAPRGL3
Genomic Variants (DGV)RGL3 [DGVbeta]
Mutations
ICGC Data PortalRGL3 
TCGA Data PortalRGL3 
Broad Tumor PortalRGL3
OASIS PortalRGL3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRGL3 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RGL3
DgiDB (Drug Gene Interaction Database)RGL3
DoCM (Curated mutations)RGL3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RGL3 (select a term)
intoGenRGL3
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)19:11504732-11530018
CONAN: Copy Number AnalysisRGL3 
Mutations and Diseases : HGMDRGL3
OMIM616743   
MedgenRGL3
Genetic Testing Registry RGL3
NextProtQ3MIN7 [Medical]
TSGene57139
GENETestsRGL3
Huge Navigator RGL3 [HugePedia]  RGL3 [HugeCancerGEM]
snp3D : Map Gene to Disease57139
BioCentury BCIQRGL3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57139
Chemical/Pharm GKB GenePA134979213
Clinical trialRGL3
Miscellaneous
canSAR (ICR)RGL3 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRGL3
GoPubMedRGL3
iHOPRGL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Apr 16 18:02:04 CEST 2016

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