Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RGMA (repulsive guidance molecule family member a)

Identity

Alias_namesRGM domain family
Alias_symbol (synonym)RGM
RGMa
Other alias
HGNC (Hugo) RGMA
LocusID (NCBI) 56963
Atlas_Id 51052
Location 15q26.1  [Link to chromosome band 15q26]
Location_base_pair Starts at 93043406 and ends at 93073987 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CMTM4 (16q21) / RGMA (15q26.1)RGMA (15q26.1) / KCTD10 (12q24.11)RGMA (15q26.1) / SFTPC (8p21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RGMA   30308
Cards
Entrez_Gene (NCBI)RGMA  56963  repulsive guidance molecule family member a
AliasesRGM
GeneCards (Weizmann)RGMA
Ensembl hg19 (Hinxton)ENSG00000182175 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182175 [Gene_View]  chr15:93043406-93073987 [Contig_View]  RGMA [Vega]
ICGC DataPortalENSG00000182175
TCGA cBioPortalRGMA
AceView (NCBI)RGMA
Genatlas (Paris)RGMA
WikiGenes56963
SOURCE (Princeton)RGMA
Genetics Home Reference (NIH)RGMA
Genomic and cartography
GoldenPath hg38 (UCSC)RGMA  -     chr15:93043406-93073987 -  15q26.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RGMA  -     15q26.1   [Description]    (hg19-Feb_2009)
EnsemblRGMA - 15q26.1 [CytoView hg19]  RGMA - 15q26.1 [CytoView hg38]
Mapping of homologs : NCBIRGMA [Mapview hg19]  RGMA [Mapview hg38]
OMIM607362   
Gene and transcription
Genbank (Entrez)AK074910 AK074966 AK074980 AK125047 AK125204
RefSeq transcript (Entrez)NM_001166283 NM_001166286 NM_001166287 NM_001166288 NM_001166289 NM_020211
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RGMA
Cluster EST : UnigeneHs.271277 [ NCBI ]
CGAP (NCI)Hs.271277
Alternative Splicing GalleryENSG00000182175
Gene ExpressionRGMA [ NCBI-GEO ]   RGMA [ EBI - ARRAY_EXPRESS ]   RGMA [ SEEK ]   RGMA [ MEM ]
Gene Expression Viewer (FireBrowse)RGMA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56963
GTEX Portal (Tissue expression)RGMA
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96B86   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96B86  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96B86
Splice isoforms : SwissVarQ96B86
PhosPhoSitePlusQ96B86
Domains : Interpro (EBI)RGM_C    RGM_N    RGMA   
Domain families : Pfam (Sanger)RGM_C (PF06534)    RGM_N (PF06535)   
Domain families : Pfam (NCBI)pfam06534    pfam06535   
Conserved Domain (NCBI)RGMA
DMDM Disease mutations56963
Blocks (Seattle)RGMA
PDB (SRS)4UHY   
PDB (PDBSum)4UHY   
PDB (IMB)4UHY   
PDB (RSDB)4UHY   
Structural Biology KnowledgeBase4UHY   
SCOP (Structural Classification of Proteins)4UHY   
CATH (Classification of proteins structures)4UHY   
SuperfamilyQ96B86
Human Protein AtlasENSG00000182175
Peptide AtlasQ96B86
HPRD09560
IPIIPI00478417   IPI00015049   IPI01009646   IPI00816347   IPI01025467   IPI01025597   IPI01025333   IPI01025138   IPI00952943   
Protein Interaction databases
DIP (DOE-UCLA)Q96B86
IntAct (EBI)Q96B86
FunCoupENSG00000182175
BioGRIDRGMA
STRING (EMBL)RGMA
ZODIACRGMA
Ontologies - Pathways
QuickGOQ96B86
Ontology : AmiGOglycoprotein binding  protein binding  endoplasmic reticulum  plasma membrane  coreceptor activity  BMP signaling pathway  anchored component of membrane  positive regulation of transcription from RNA polymerase II promoter  negative regulation of axon regeneration  extracellular exosome  transferrin receptor binding  
Ontology : EGO-EBIglycoprotein binding  protein binding  endoplasmic reticulum  plasma membrane  coreceptor activity  BMP signaling pathway  anchored component of membrane  positive regulation of transcription from RNA polymerase II promoter  negative regulation of axon regeneration  extracellular exosome  transferrin receptor binding  
NDEx NetworkRGMA
Atlas of Cancer Signalling NetworkRGMA
Wikipedia pathwaysRGMA
Orthology - Evolution
OrthoDB56963
GeneTree (enSembl)ENSG00000182175
Phylogenetic Trees/Animal Genes : TreeFamRGMA
HOVERGENQ96B86
HOGENOMQ96B86
Homologs : HomoloGeneRGMA
Homology/Alignments : Family Browser (UCSC)RGMA
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRGMA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RGMA
dbVarRGMA
ClinVarRGMA
1000_GenomesRGMA 
Exome Variant ServerRGMA
ExAC (Exome Aggregation Consortium)RGMA (select the gene name)
Genetic variants : HAPMAP56963
Genomic Variants (DGV)RGMA [DGVbeta]
DECIPHERRGMA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRGMA 
Mutations
ICGC Data PortalRGMA 
TCGA Data PortalRGMA 
Broad Tumor PortalRGMA
OASIS PortalRGMA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRGMA  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRGMA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RGMA
DgiDB (Drug Gene Interaction Database)RGMA
DoCM (Curated mutations)RGMA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RGMA (select a term)
intoGenRGMA
Cancer3DRGMA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607362   
Orphanet
MedgenRGMA
Genetic Testing Registry RGMA
NextProtQ96B86 [Medical]
TSGene56963
GENETestsRGMA
Target ValidationRGMA
Huge Navigator RGMA [HugePedia]
snp3D : Map Gene to Disease56963
BioCentury BCIQRGMA
ClinGenRGMA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56963
Chemical/Pharm GKB GenePA128394693
Clinical trialRGMA
Miscellaneous
canSAR (ICR)RGMA (select the gene name)
Probes
Litterature
PubMed40 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRGMA
EVEXRGMA
GoPubMedRGMA
iHOPRGMA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:12:55 CEST 2017

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