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RGMB (repulsive guidance molecule family member b)

Identity

Alias_namesRGM domain family
Alias_symbol (synonym)FLJ90406
DRAGON
Other alias
HGNC (Hugo) RGMB
LocusID (NCBI) 285704
Atlas_Id 52385
Location 5q15  [Link to chromosome band 5q15]
Location_base_pair Starts at 98769295 and ends at 98796494 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RGMB (5q15) / CPD (17q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RGMB   26896
Cards
Entrez_Gene (NCBI)RGMB  285704  repulsive guidance molecule family member b
AliasesDRAGON
GeneCards (Weizmann)RGMB
Ensembl hg19 (Hinxton)ENSG00000174136 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174136 [Gene_View]  chr5:98769295-98796494 [Contig_View]  RGMB [Vega]
ICGC DataPortalENSG00000174136
TCGA cBioPortalRGMB
AceView (NCBI)RGMB
Genatlas (Paris)RGMB
WikiGenes285704
SOURCE (Princeton)RGMB
Genetics Home Reference (NIH)RGMB
Genomic and cartography
GoldenPath hg38 (UCSC)RGMB  -     chr5:98769295-98796494 +  5q15   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RGMB  -     5q15   [Description]    (hg19-Feb_2009)
EnsemblRGMB - 5q15 [CytoView hg19]  RGMB - 5q15 [CytoView hg38]
Mapping of homologs : NCBIRGMB [Mapview hg19]  RGMB [Mapview hg38]
OMIM612687   
Gene and transcription
Genbank (Entrez)AK054622 AK074887 AK125284 BC020513 BC044231
RefSeq transcript (Entrez)NM_001012761 NM_173670
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RGMB
Cluster EST : UnigeneHs.526902 [ NCBI ]
CGAP (NCI)Hs.526902
Alternative Splicing GalleryENSG00000174136
Gene ExpressionRGMB [ NCBI-GEO ]   RGMB [ EBI - ARRAY_EXPRESS ]   RGMB [ SEEK ]   RGMB [ MEM ]
Gene Expression Viewer (FireBrowse)RGMB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285704
GTEX Portal (Tissue expression)RGMB
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NW40   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NW40  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NW40
Splice isoforms : SwissVarQ6NW40
PhosPhoSitePlusQ6NW40
Domains : Interpro (EBI)DRAGON    RGM_C    RGM_N   
Domain families : Pfam (Sanger)RGM_C (PF06534)    RGM_N (PF06535)   
Domain families : Pfam (NCBI)pfam06534    pfam06535   
Conserved Domain (NCBI)RGMB
DMDM Disease mutations285704
Blocks (Seattle)RGMB
PDB (SRS)4BQ6    4BQ7    4BQ8    4UHZ    4UI0    4UI2   
PDB (PDBSum)4BQ6    4BQ7    4BQ8    4UHZ    4UI0    4UI2   
PDB (IMB)4BQ6    4BQ7    4BQ8    4UHZ    4UI0    4UI2   
PDB (RSDB)4BQ6    4BQ7    4BQ8    4UHZ    4UI0    4UI2   
Structural Biology KnowledgeBase4BQ6    4BQ7    4BQ8    4UHZ    4UI0    4UI2   
SCOP (Structural Classification of Proteins)4BQ6    4BQ7    4BQ8    4UHZ    4UI0    4UI2   
CATH (Classification of proteins structures)4BQ6    4BQ7    4BQ8    4UHZ    4UI0    4UI2   
SuperfamilyQ6NW40
Human Protein AtlasENSG00000174136
Peptide AtlasQ6NW40
HPRD15243
IPIIPI00963921   IPI00465420   IPI00456736   
Protein Interaction databases
DIP (DOE-UCLA)Q6NW40
IntAct (EBI)Q6NW40
FunCoupENSG00000174136
BioGRIDRGMB
STRING (EMBL)RGMB
ZODIACRGMB
Ontologies - Pathways
QuickGOQ6NW40
Ontology : AmiGOendoplasmic reticulum-Golgi intermediate compartment  plasma membrane  cell adhesion  signal transduction  coreceptor activity  BMP signaling pathway  BMP signaling pathway  identical protein binding  membrane raft  positive regulation of transcription, DNA-templated  anchored component of plasma membrane  
Ontology : EGO-EBIendoplasmic reticulum-Golgi intermediate compartment  plasma membrane  cell adhesion  signal transduction  coreceptor activity  BMP signaling pathway  BMP signaling pathway  identical protein binding  membrane raft  positive regulation of transcription, DNA-templated  anchored component of plasma membrane  
NDEx NetworkRGMB
Atlas of Cancer Signalling NetworkRGMB
Wikipedia pathwaysRGMB
Orthology - Evolution
OrthoDB285704
GeneTree (enSembl)ENSG00000174136
Phylogenetic Trees/Animal Genes : TreeFamRGMB
HOVERGENQ6NW40
HOGENOMQ6NW40
Homologs : HomoloGeneRGMB
Homology/Alignments : Family Browser (UCSC)RGMB
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRGMB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RGMB
dbVarRGMB
ClinVarRGMB
1000_GenomesRGMB 
Exome Variant ServerRGMB
ExAC (Exome Aggregation Consortium)RGMB (select the gene name)
Genetic variants : HAPMAP285704
Genomic Variants (DGV)RGMB [DGVbeta]
DECIPHERRGMB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRGMB 
Mutations
ICGC Data PortalRGMB 
TCGA Data PortalRGMB 
Broad Tumor PortalRGMB
OASIS PortalRGMB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRGMB  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRGMB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RGMB
DgiDB (Drug Gene Interaction Database)RGMB
DoCM (Curated mutations)RGMB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RGMB (select a term)
intoGenRGMB
Cancer3DRGMB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612687   
Orphanet
MedgenRGMB
Genetic Testing Registry RGMB
NextProtQ6NW40 [Medical]
TSGene285704
GENETestsRGMB
Target ValidationRGMB
Huge Navigator RGMB [HugePedia]
snp3D : Map Gene to Disease285704
BioCentury BCIQRGMB
ClinGenRGMB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285704
Chemical/Pharm GKB GenePA134868641
Clinical trialRGMB
Miscellaneous
canSAR (ICR)RGMB (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRGMB
EVEXRGMB
GoPubMedRGMB
iHOPRGMB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:53:07 CEST 2017

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