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RGP1 (RGP1 retrograde golgi transport homolog (S. cerevisiae))

Identity

Alias_namesKIAA0258
KIAA0258
RGP1 retrograde golgi transport homolog (S. cerevisiae)
Other alias
HGNC (Hugo) RGP1
LocusID (NCBI) 9827
Atlas_Id 72610
Location 9p13.3  [Link to chromosome band 9p13]
Location_base_pair Starts at 35749277 and ends at 35753264 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MSMP (9p13.3) / RGP1 (9p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RGP1   21965
Cards
Entrez_Gene (NCBI)RGP1  9827  RGP1 retrograde golgi transport homolog (S. cerevisiae)
AliasesKIAA0258
GeneCards (Weizmann)RGP1
Ensembl hg19 (Hinxton) [Gene_View]  chr9:35749277-35753264 [Contig_View]  RGP1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:35749277-35753264 [Contig_View]  RGP1 [Vega]
TCGA cBioPortalRGP1
AceView (NCBI)RGP1
Genatlas (Paris)RGP1
WikiGenes9827
SOURCE (Princeton)RGP1
Genetics Home Reference (NIH)RGP1
Genomic and cartography
GoldenPath hg19 (UCSC)RGP1  -     chr9:35749277-35753264 +  9p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RGP1  -     9p13.3   [Description]    (hg38-Dec_2013)
EnsemblRGP1 - 9p13.3 [CytoView hg19]  RGP1 - 9p13.3 [CytoView hg38]
Mapping of homologs : NCBIRGP1 [Mapview hg19]  RGP1 [Mapview hg38]
OMIM615742   
Gene and transcription
Genbank (Entrez)AK289566 BC001725 D87447 DQ600531 HQ447683
RefSeq transcript (Entrez)NM_001080496
RefSeq genomic (Entrez)NC_000009 NC_018920 NG_033899 NT_008413 NW_004929342
Consensus coding sequences : CCDS (NCBI)RGP1
Cluster EST : UnigeneHs.493804 [ NCBI ]
CGAP (NCI)Hs.493804
Gene ExpressionRGP1 [ NCBI-GEO ]   RGP1 [ EBI - ARRAY_EXPRESS ]   RGP1 [ SEEK ]   RGP1 [ MEM ]
Gene Expression Viewer (FireBrowse)RGP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9827
GTEX Portal (Tissue expression)RGP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92546   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92546  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92546
Splice isoforms : SwissVarQ92546
PhosPhoSitePlusQ92546
Domains : Interpro (EBI)Rgp1   
Domain families : Pfam (Sanger)Rgp1 (PF08737)   
Domain families : Pfam (NCBI)pfam08737   
Conserved Domain (NCBI)RGP1
DMDM Disease mutations9827
Blocks (Seattle)RGP1
SuperfamilyQ92546
Peptide AtlasQ92546
IPIIPI00021987   IPI00940671   
Protein Interaction databases
DIP (DOE-UCLA)Q92546
IntAct (EBI)Q92546
BioGRIDRGP1
STRING (EMBL)RGP1
ZODIACRGP1
Ontologies - Pathways
QuickGOQ92546
Ontology : AmiGOprotein binding  cytosol  membrane  Rab guanyl-nucleotide exchange factor activity  Rab GTPase binding  RIC1-RGP1 guanyl-nucleotide exchange factor complex  retrograde transport, endosome to Golgi  protein complex  positive regulation of GTPase activity  negative regulation of cellular protein catabolic process  
Ontology : EGO-EBIprotein binding  cytosol  membrane  Rab guanyl-nucleotide exchange factor activity  Rab GTPase binding  RIC1-RGP1 guanyl-nucleotide exchange factor complex  retrograde transport, endosome to Golgi  protein complex  positive regulation of GTPase activity  negative regulation of cellular protein catabolic process  
NDEx NetworkRGP1
Atlas of Cancer Signalling NetworkRGP1
Wikipedia pathwaysRGP1
Orthology - Evolution
OrthoDB9827
Phylogenetic Trees/Animal Genes : TreeFamRGP1
HOVERGENQ92546
HOGENOMQ92546
Homologs : HomoloGeneRGP1
Homology/Alignments : Family Browser (UCSC)RGP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRGP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RGP1
dbVarRGP1
ClinVarRGP1
1000_GenomesRGP1 
Exome Variant ServerRGP1
ExAC (Exome Aggregation Consortium)RGP1 (select the gene name)
Genetic variants : HAPMAP9827
Genomic Variants (DGV)RGP1 [DGVbeta]
DECIPHER (Syndromes)9:35749277-35753264  
CONAN: Copy Number AnalysisRGP1 
Mutations
ICGC Data PortalRGP1 
TCGA Data PortalRGP1 
Broad Tumor PortalRGP1
OASIS PortalRGP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRGP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRGP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RGP1
DgiDB (Drug Gene Interaction Database)RGP1
DoCM (Curated mutations)RGP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RGP1 (select a term)
intoGenRGP1
Cancer3DRGP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615742   
Orphanet
MedgenRGP1
Genetic Testing Registry RGP1
NextProtQ92546 [Medical]
TSGene9827
GENETestsRGP1
Huge Navigator RGP1 [HugePedia]
snp3D : Map Gene to Disease9827
BioCentury BCIQRGP1
ClinGenRGP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9827
Chemical/Pharm GKB GenePA162401278
Clinical trialRGP1
Miscellaneous
canSAR (ICR)RGP1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRGP1
EVEXRGP1
GoPubMedRGP1
iHOPRGP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:40:59 CET 2017

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