Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RGPD1 (RANBP2-like and GRIP domain containing 1)

Identity

Alias_symbol (synonym)RGP1
Other aliasRGPD2
RanBP2L2
HGNC (Hugo) RGPD1
LocusID (NCBI) 400966
Atlas_Id 72611
Location 2p11.2  [Link to chromosome band 2p11]
Location_base_pair Starts at 87144738 and ends at 87241099 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
WRAP73 (1p36.32) / RGPD1 (2p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RGPD1   32414
Cards
Entrez_Gene (NCBI)RGPD1  400966  RANBP2-like and GRIP domain containing 1
AliasesRGP1; RGPD2; RanBP2L2
GeneCards (Weizmann)RGPD1
Ensembl hg19 (Hinxton)ENSG00000187627 [Gene_View]  chr2:87144738-87241099 [Contig_View]  RGPD1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000187627 [Gene_View]  chr2:87144738-87241099 [Contig_View]  RGPD1 [Vega]
ICGC DataPortalENSG00000187627
TCGA cBioPortalRGPD1
AceView (NCBI)RGPD1
Genatlas (Paris)RGPD1
WikiGenes400966
SOURCE (Princeton)RGPD1
Genetics Home Reference (NIH)RGPD1
Genomic and cartography
GoldenPath hg19 (UCSC)RGPD1  -     chr2:87144738-87241099 +  2p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RGPD1  -     2p11.2   [Description]    (hg38-Dec_2013)
EnsemblRGPD1 - 2p11.2 [CytoView hg19]  RGPD1 - 2p11.2 [CytoView hg38]
Mapping of homologs : NCBIRGPD1 [Mapview hg19]  RGPD1 [Mapview hg38]
OMIM612704   
Gene and transcription
Genbank (Entrez)AF237700 AK303443 BC172352 CR749330 DA725306
RefSeq transcript (Entrez)NM_001024457
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_022184 NW_004929300
Consensus coding sequences : CCDS (NCBI)RGPD1
Cluster EST : UnigeneHs.728970 [ NCBI ]
CGAP (NCI)Hs.728970
Alternative Splicing GalleryENSG00000187627
Gene ExpressionRGPD1 [ NCBI-GEO ]   RGPD1 [ EBI - ARRAY_EXPRESS ]   RGPD1 [ SEEK ]   RGPD1 [ MEM ]
Gene Expression Viewer (FireBrowse)RGPD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400966
GTEX Portal (Tissue expression)RGPD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DJD0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DJD0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DJD0
Splice isoforms : SwissVarP0DJD0
PhosPhoSitePlusP0DJD0
Domaine pattern : Prosite (Expaxy)GRIP (PS50913)    RANBD1 (PS50196)    TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)GRIP    PH_like_dom    Ran_bind_dom    TPR-contain_dom    TPR-like_helical_dom    TPR_1    TPR_repeat   
Domain families : Pfam (Sanger)GRIP (PF01465)    Ran_BP1 (PF00638)    TPR_1 (PF00515)   
Domain families : Pfam (NCBI)pfam01465    pfam00638    pfam00515   
Domain families : Smart (EMBL)Grip (SM00755)  RanBD (SM00160)  
Conserved Domain (NCBI)RGPD1
DMDM Disease mutations400966
Blocks (Seattle)RGPD1
SuperfamilyP0DJD0
Human Protein AtlasENSG00000187627
Peptide AtlasP0DJD0
IPIIPI01014963   IPI00915967   IPI01014542   IPI00941935   IPI00956752   IPI00654810   IPI00470913   IPI00927597   
Protein Interaction databases
DIP (DOE-UCLA)P0DJD0
IntAct (EBI)P0DJD0
FunCoupENSG00000187627
BioGRIDRGPD1
STRING (EMBL)RGPD1
ZODIACRGPD1
Ontologies - Pathways
QuickGOP0DJD0
Ontology : AmiGOprotein targeting to Golgi  intracellular  
Ontology : EGO-EBIprotein targeting to Golgi  intracellular  
NDEx NetworkRGPD1
Atlas of Cancer Signalling NetworkRGPD1
Wikipedia pathwaysRGPD1
Orthology - Evolution
OrthoDB400966
GeneTree (enSembl)ENSG00000187627
Phylogenetic Trees/Animal Genes : TreeFamRGPD1
HOVERGENP0DJD0
HOGENOMP0DJD0
Homologs : HomoloGeneRGPD1
Homology/Alignments : Family Browser (UCSC)RGPD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRGPD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RGPD1
dbVarRGPD1
ClinVarRGPD1
1000_GenomesRGPD1 
Exome Variant ServerRGPD1
ExAC (Exome Aggregation Consortium)RGPD1 (select the gene name)
Genetic variants : HAPMAP400966
Genomic Variants (DGV)RGPD1 [DGVbeta]
DECIPHER (Syndromes)2:87144738-87241099  ENSG00000187627
CONAN: Copy Number AnalysisRGPD1 
Mutations
ICGC Data PortalRGPD1 
TCGA Data PortalRGPD1 
Broad Tumor PortalRGPD1
OASIS PortalRGPD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRGPD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRGPD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RGPD1
DgiDB (Drug Gene Interaction Database)RGPD1
DoCM (Curated mutations)RGPD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RGPD1 (select a term)
intoGenRGPD1
Cancer3DRGPD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612704   
Orphanet
MedgenRGPD1
Genetic Testing Registry RGPD1
NextProtP0DJD0 [Medical]
TSGene400966
GENETestsRGPD1
Huge Navigator RGPD1 [HugePedia]
snp3D : Map Gene to Disease400966
BioCentury BCIQRGPD1
ClinGenRGPD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400966
Chemical/Pharm GKB GenePA142671070
Clinical trialRGPD1
Miscellaneous
canSAR (ICR)RGPD1 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRGPD1
EVEXRGPD1
GoPubMedRGPD1
iHOPRGPD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:40:59 CET 2017

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