Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RGPD2 (RANBP2-like and GRIP domain containing 2)

Identity

Alias_symbol (synonym)RGP2
RANBP2L2
Other aliasNUP358
HGNC (Hugo) RGPD2
LocusID (NCBI) 729857
Atlas_Id 72612
Location 2p11.2  [Link to chromosome band 2p11]
Location_base_pair Starts at 87140935 and ends at 87239861 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RGPD2 (2p11.2) / IARS (9q22.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RGPD2   32415
Cards
Entrez_Gene (NCBI)RGPD2  729857  RANBP2-like and GRIP domain containing 2
AliasesNUP358; RANBP2L2; RGP2
GeneCards (Weizmann)RGPD2
Ensembl hg19 (Hinxton) [Gene_View]  chr2:87140935-87239861 [Contig_View]  RGPD2 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:87140935-87239861 [Contig_View]  RGPD2 [Vega]
TCGA cBioPortalRGPD2
AceView (NCBI)RGPD2
Genatlas (Paris)RGPD2
WikiGenes729857
SOURCE (Princeton)RGPD2
Genetics Home Reference (NIH)RGPD2
Genomic and cartography
GoldenPath hg19 (UCSC)RGPD2  -     chr2:87140935-87239861 +  2p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RGPD2  -     2p11.2   [Description]    (hg38-Dec_2013)
EnsemblRGPD2 - 2p11.2 [CytoView hg19]  RGPD2 - 2p11.2 [CytoView hg38]
Mapping of homologs : NCBIRGPD2 [Mapview hg19]  RGPD2 [Mapview hg38]
OMIM612705   
Gene and transcription
Genbank (Entrez)AK298885 AK300276 AK300352 AK302429 AY354203
RefSeq transcript (Entrez)NM_001078170
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_022184 NW_004929300
Consensus coding sequences : CCDS (NCBI)RGPD2
Cluster EST : UnigeneHs.728970 [ NCBI ]
CGAP (NCI)Hs.728970
Gene ExpressionRGPD2 [ NCBI-GEO ]   RGPD2 [ EBI - ARRAY_EXPRESS ]   RGPD2 [ SEEK ]   RGPD2 [ MEM ]
Gene Expression Viewer (FireBrowse)RGPD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729857
GTEX Portal (Tissue expression)RGPD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DJD1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DJD1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DJD1
Splice isoforms : SwissVarP0DJD1
PhosPhoSitePlusP0DJD1
Domaine pattern : Prosite (Expaxy)GRIP (PS50913)    RANBD1 (PS50196)    TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)GRIP    PH_like_dom    Ran_bind_dom    TPR-contain_dom    TPR-like_helical_dom    TPR_1    TPR_repeat   
Domain families : Pfam (Sanger)GRIP (PF01465)    Ran_BP1 (PF00638)    TPR_1 (PF00515)   
Domain families : Pfam (NCBI)pfam01465    pfam00638    pfam00515   
Domain families : Smart (EMBL)Grip (SM00755)  RanBD (SM00160)  
Conserved Domain (NCBI)RGPD2
DMDM Disease mutations729857
Blocks (Seattle)RGPD2
SuperfamilyP0DJD1
Peptide AtlasP0DJD1
HPRD18641
Protein Interaction databases
DIP (DOE-UCLA)P0DJD1
IntAct (EBI)P0DJD1
BioGRIDRGPD2
STRING (EMBL)RGPD2
ZODIACRGPD2
Ontologies - Pathways
QuickGOP0DJD1
Ontology : AmiGOprotein targeting to Golgi  intracellular  
Ontology : EGO-EBIprotein targeting to Golgi  intracellular  
NDEx NetworkRGPD2
Atlas of Cancer Signalling NetworkRGPD2
Wikipedia pathwaysRGPD2
Orthology - Evolution
OrthoDB729857
Phylogenetic Trees/Animal Genes : TreeFamRGPD2
HOVERGENP0DJD1
HOGENOMP0DJD1
Homologs : HomoloGeneRGPD2
Homology/Alignments : Family Browser (UCSC)RGPD2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRGPD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RGPD2
dbVarRGPD2
ClinVarRGPD2
1000_GenomesRGPD2 
Exome Variant ServerRGPD2
ExAC (Exome Aggregation Consortium)RGPD2 (select the gene name)
Genetic variants : HAPMAP729857
Genomic Variants (DGV)RGPD2 [DGVbeta]
DECIPHER (Syndromes)2:87140935-87239861  
CONAN: Copy Number AnalysisRGPD2 
Mutations
ICGC Data PortalRGPD2 
TCGA Data PortalRGPD2 
Broad Tumor PortalRGPD2
OASIS PortalRGPD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRGPD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRGPD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RGPD2
DgiDB (Drug Gene Interaction Database)RGPD2
DoCM (Curated mutations)RGPD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RGPD2 (select a term)
intoGenRGPD2
Cancer3DRGPD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612705   
Orphanet
MedgenRGPD2
Genetic Testing Registry RGPD2
NextProtP0DJD1 [Medical]
TSGene729857
GENETestsRGPD2
Huge Navigator RGPD2 [HugePedia]
snp3D : Map Gene to Disease729857
BioCentury BCIQRGPD2
ClinGenRGPD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729857
Chemical/Pharm GKB GenePA142671071
Clinical trialRGPD2
Miscellaneous
canSAR (ICR)RGPD2 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRGPD2
EVEXRGPD2
GoPubMedRGPD2
iHOPRGPD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:40:59 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.