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RGPD3 (RANBP2 like and GRIP domain containing 3)

Identity

Alias (NCBI)RGP3
HGNC (Hugo) RGPD3
HGNC Alias symbRGP3
LocusID (NCBI) 653489
Atlas_Id 54581
Location 2q12.2  [Link to chromosome band 2q12]
Location_base_pair Starts at 106403406 and ends at 106468413 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ANAPC1 (2q13) / RGPD3 (2q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RGPD3   32416
Cards
Entrez_Gene (NCBI)RGPD3    RANBP2 like and GRIP domain containing 3
AliasesRGP3
GeneCards (Weizmann)RGPD3
Ensembl hg19 (Hinxton)ENSG00000153165 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000153165 [Gene_View]  ENSG00000153165 [Sequence]  chr2:106403406-106468413 [Contig_View]  RGPD3 [Vega]
ICGC DataPortalENSG00000153165
TCGA cBioPortalRGPD3
AceView (NCBI)RGPD3
Genatlas (Paris)RGPD3
SOURCE (Princeton)RGPD3
Genetics Home Reference (NIH)RGPD3
Genomic and cartography
GoldenPath hg38 (UCSC)RGPD3  -     chr2:106403406-106468413 -  2q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RGPD3  -     2q12.2   [Description]    (hg19-Feb_2009)
GoldenPathRGPD3 - 2q12.2 [CytoView hg19]  RGPD3 - 2q12.2 [CytoView hg38]
ImmunoBaseENSG00000153165
Genome Data Viewer NCBIRGPD3 [Mapview hg19]  
OMIM612706   
Gene and transcription
Genbank (Entrez)AK310529
RefSeq transcript (Entrez)NM_001144013
Consensus coding sequences : CCDS (NCBI)RGPD3
Gene ExpressionRGPD3 [ NCBI-GEO ]   RGPD3 [ EBI - ARRAY_EXPRESS ]   RGPD3 [ SEEK ]   RGPD3 [ MEM ]
Gene Expression Viewer (FireBrowse)RGPD3 [ Firebrowse - Broad ]
GenevisibleExpression of RGPD3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653489
GTEX Portal (Tissue expression)RGPD3
Human Protein AtlasENSG00000153165-RGPD3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NKT7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NKT7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NKT7
PhosPhoSitePlusA6NKT7
Domaine pattern : Prosite (Expaxy)GRIP (PS50913)    RANBD1 (PS50196)    TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)GCC2_Rab_bind    GRIP_dom    PH-like_dom_sf    Ran_bind_dom    TPR-contain_dom    TPR-like_helical_dom_sf    TPR_repeat   
Domain families : Pfam (Sanger)GRIP (PF01465)    Rab_bind (PF16704)    Ran_BP1 (PF00638)    TPR_8 (PF13181)   
Domain families : Pfam (NCBI)pfam01465    pfam16704    pfam00638    pfam13181   
Domain families : Smart (EMBL)Grip (SM00755)  RanBD (SM00160)  TPR (SM00028)  
Conserved Domain (NCBI)RGPD3
SuperfamilyA6NKT7
AlphaFold pdb e-kbA6NKT7   
Human Protein Atlas [tissue]ENSG00000153165-RGPD3 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)A6NKT7
IntAct (EBI)A6NKT7
BioGRIDRGPD3
STRING (EMBL)RGPD3
ZODIACRGPD3
Ontologies - Pathways
QuickGOA6NKT7
Ontology : AmiGOGTPase activator activity  nuclear pore  cytoplasm  NLS-bearing protein import into nucleus  regulation of catalytic activity  
Ontology : EGO-EBIGTPase activator activity  nuclear pore  cytoplasm  NLS-bearing protein import into nucleus  regulation of catalytic activity  
NDEx NetworkRGPD3
Atlas of Cancer Signalling NetworkRGPD3
Wikipedia pathwaysRGPD3
Orthology - Evolution
OrthoDB653489
GeneTree (enSembl)ENSG00000153165
Phylogenetic Trees/Animal Genes : TreeFamRGPD3
Homologs : HomoloGeneRGPD3
Homology/Alignments : Family Browser (UCSC)RGPD3
Gene fusions - Rearrangements
Fusion : MitelmanANAPC1/RGPD3 [2q13/2q12.2]  
Fusion : QuiverRGPD3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRGPD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RGPD3
dbVarRGPD3
ClinVarRGPD3
MonarchRGPD3
1000_GenomesRGPD3 
Exome Variant ServerRGPD3
GNOMAD BrowserENSG00000153165
Varsome BrowserRGPD3
ACMGRGPD3 variants
VarityA6NKT7
Genomic Variants (DGV)RGPD3 [DGVbeta]
DECIPHERRGPD3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRGPD3 
Mutations
ICGC Data PortalRGPD3 
TCGA Data PortalRGPD3 
Broad Tumor PortalRGPD3
OASIS PortalRGPD3 [ Somatic mutations - Copy number]
Cancer Gene: CensusRGPD3 
Somatic Mutations in Cancer : COSMICRGPD3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRGPD3
Mutations and Diseases : HGMDRGPD3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRGPD3
DgiDB (Drug Gene Interaction Database)RGPD3
DoCM (Curated mutations)RGPD3
CIViC (Clinical Interpretations of Variants in Cancer)RGPD3
Cancer3DRGPD3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612706   
Orphanet
DisGeNETRGPD3
MedgenRGPD3
Genetic Testing Registry RGPD3
NextProtA6NKT7 [Medical]
GENETestsRGPD3
Target ValidationRGPD3
Huge Navigator RGPD3 [HugePedia]
ClinGenRGPD3
Clinical trials, drugs, therapy
MyCancerGenomeRGPD3
Protein Interactions : CTDRGPD3
Pharm GKB GenePA142671072
PharosA6NKT7
Clinical trialRGPD3
Miscellaneous
canSAR (ICR)RGPD3
HarmonizomeRGPD3
DataMed IndexRGPD3
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRGPD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:28:49 CEST 2021

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