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RGPD3 (RANBP2-like and GRIP domain containing 3)

Identity

Alias_symbol (synonym)RGP3
Other alias
HGNC (Hugo) RGPD3
LocusID (NCBI) 653489
Atlas_Id 54581
Location 2q12.2  [Link to chromosome band 2q12]
Location_base_pair Starts at 106404680 and ends at 106468345 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ANAPC1 (2q13) / RGPD3 (2q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RGPD3   32416
Cards
Entrez_Gene (NCBI)RGPD3  653489  RANBP2-like and GRIP domain containing 3
AliasesRGP3
GeneCards (Weizmann)RGPD3
Ensembl hg19 (Hinxton)ENSG00000153165 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000153165 [Gene_View]  chr2:106404680-106468345 [Contig_View]  RGPD3 [Vega]
ICGC DataPortalENSG00000153165
TCGA cBioPortalRGPD3
AceView (NCBI)RGPD3
Genatlas (Paris)RGPD3
WikiGenes653489
SOURCE (Princeton)RGPD3
Genetics Home Reference (NIH)RGPD3
Genomic and cartography
GoldenPath hg38 (UCSC)RGPD3  -     chr2:106404680-106468345 -  2q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RGPD3  -     2q12.2   [Description]    (hg19-Feb_2009)
EnsemblRGPD3 - 2q12.2 [CytoView hg19]  RGPD3 - 2q12.2 [CytoView hg38]
Mapping of homologs : NCBIRGPD3 [Mapview hg19]  RGPD3 [Mapview hg38]
OMIM612706   
Gene and transcription
Genbank (Entrez)AK310529
RefSeq transcript (Entrez)NM_001144013
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RGPD3
Cluster EST : UnigeneHs.726367 [ NCBI ]
CGAP (NCI)Hs.726367
Alternative Splicing GalleryENSG00000153165
Gene ExpressionRGPD3 [ NCBI-GEO ]   RGPD3 [ EBI - ARRAY_EXPRESS ]   RGPD3 [ SEEK ]   RGPD3 [ MEM ]
Gene Expression Viewer (FireBrowse)RGPD3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653489
GTEX Portal (Tissue expression)RGPD3
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NKT7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NKT7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NKT7
Splice isoforms : SwissVarA6NKT7
PhosPhoSitePlusA6NKT7
Domaine pattern : Prosite (Expaxy)GRIP (PS50913)    RANBD1 (PS50196)    TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)GCC2_Rab_bind    GRIP_dom    PH_dom-like    Ran_bind_dom    TPR-contain_dom    TPR-like_helical_dom    TPR_repeat   
Domain families : Pfam (Sanger)GRIP (PF01465)    Rab_bind (PF16704)    Ran_BP1 (PF00638)   
Domain families : Pfam (NCBI)pfam01465    pfam16704    pfam00638   
Domain families : Smart (EMBL)Grip (SM00755)  RanBD (SM00160)  TPR (SM00028)  
Conserved Domain (NCBI)RGPD3
DMDM Disease mutations653489
Blocks (Seattle)RGPD3
SuperfamilyA6NKT7
Human Protein AtlasENSG00000153165
Peptide AtlasA6NKT7
IPIIPI00921207   IPI00943097   IPI00942933   IPI00976502   IPI01009622   
Protein Interaction databases
DIP (DOE-UCLA)A6NKT7
IntAct (EBI)A6NKT7
FunCoupENSG00000153165
BioGRIDRGPD3
STRING (EMBL)RGPD3
ZODIACRGPD3
Ontologies - Pathways
QuickGOA6NKT7
Ontology : AmiGOprotein targeting to Golgi  intracellular  
Ontology : EGO-EBIprotein targeting to Golgi  intracellular  
NDEx NetworkRGPD3
Atlas of Cancer Signalling NetworkRGPD3
Wikipedia pathwaysRGPD3
Orthology - Evolution
OrthoDB653489
GeneTree (enSembl)ENSG00000153165
Phylogenetic Trees/Animal Genes : TreeFamRGPD3
HOVERGENA6NKT7
HOGENOMA6NKT7
Homologs : HomoloGeneRGPD3
Homology/Alignments : Family Browser (UCSC)RGPD3
Gene fusions - Rearrangements
Fusion : MitelmanANAPC1/RGPD3 [2q13/2q12.2]  [t(2;2)(q12;q13)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRGPD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RGPD3
dbVarRGPD3
ClinVarRGPD3
1000_GenomesRGPD3 
Exome Variant ServerRGPD3
ExAC (Exome Aggregation Consortium)RGPD3 (select the gene name)
Genetic variants : HAPMAP653489
Genomic Variants (DGV)RGPD3 [DGVbeta]
DECIPHERRGPD3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRGPD3 
Mutations
ICGC Data PortalRGPD3 
TCGA Data PortalRGPD3 
Broad Tumor PortalRGPD3
OASIS PortalRGPD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRGPD3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRGPD3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RGPD3
DgiDB (Drug Gene Interaction Database)RGPD3
DoCM (Curated mutations)RGPD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RGPD3 (select a term)
intoGenRGPD3
Cancer3DRGPD3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612706   
Orphanet
MedgenRGPD3
Genetic Testing Registry RGPD3
NextProtA6NKT7 [Medical]
TSGene653489
GENETestsRGPD3
Target ValidationRGPD3
Huge Navigator RGPD3 [HugePedia]
snp3D : Map Gene to Disease653489
BioCentury BCIQRGPD3
ClinGenRGPD3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653489
Chemical/Pharm GKB GenePA142671072
Clinical trialRGPD3
Miscellaneous
canSAR (ICR)RGPD3 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRGPD3
EVEXRGPD3
GoPubMedRGPD3
iHOPRGPD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:28:40 CEST 2017

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