Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 15<'A> 15 16 17 18 19 20 21 22 NA

RGPD4-AS1 (RGPD4 antisense RNA 1 (head to head))

Identity

Other alias-
HGNC (Hugo) RGPD4-AS1
LocusID (NCBI) 729121
Atlas_Id 72614
Location 2q12.3  [Link to chromosome band 2q12]
Location_base_pair Starts at 107823064 and ends at 107826769 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

=/TR>
Nomenclature
HGNC (Hugo)RGPD4-AS1   49273
Cards
Entrez_Gene (NCBI)RGPD4-AS1  729121  RGPD4 antisense RNA 1 (head to head)
Aliases
GeneCards (Weizmann)RGPD4-AS1
Ensembl hg19 (Hinxton)ENSG00000230651 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000230651 [Gene_View]  chr2:107823064-107826769 [Contig_View]  RGPD4-AS1 [Ve'a]
ICGC DataPortalENSG00000230651
TCGA cBioPortalRGPD4-AS1
AceView (NCBI)RGPD4-AS1
Genatlas (Paris)RGPD4-AS1
WikiGenes729121
SOURCE (Princeton)RGPD4-AS1
Genetics Home Reference (NIH)RGPD4-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)RGPD4-AS1  -     chr2:107823064-107826769 -  2q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RGPD4-AS1  -     2q12.3   [Description]    (hg19-Feb_2009)
EnsemblRGPD4-AS1 - 2q12.3 [CytoView hg19]  RGPD4-AS1 - 2q12.3 [CytoView hg38]
Mapping of homologs : NCBIRGPD4-AS1 [Mapview hg19]  RGPD4-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA962330 AK097754 BC041173
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RGPD4-AS1
Cluster EST : UnigeneHs.386155 [ NCBI ]
CGAP (NCI)Hs.386155
Alternative Splicing GalleryENSG00000230651
Gene ExpressionRGPD4-AS1 [ NCBI-GEO ]   RGPD4-AS1 [ EBI - ARRAY_EXPRESS ]   RGPD4-AS1 [ SEEK ]   RGPD4-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)RGPD4-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)729121
GTEX Portal (Tissue expression)RGPD4-AS1
Human Protein AtlasENSG00000230651-RGPD4-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RGPD4-AS1
DMDM Disease mutations729121
Blocks (Seattle)RGPD4-AS1
Human Protein Atlas [tissue]ENSG00000230651-RGPD4-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000230651
BioGRIDRGPD4-AS1
STRING (EMBL)RGPD4-AS1
ZODIACRGPD4-AS1
Ontologies - Pathways
Huge Navigator RGPD4-AS1 [HugePedia]
snp3D : Map Gene to Disease729121
BioCentury BCIQRGPD4-AS1
ClinGenRGPD4-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729121
Clinical trialRGPD4-AS1
Miscellaneous
canSAR (ICR)RGPD4-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRGPD4-AS1
EVEXRGPD4-AS1
GoPubMedRGPD4-AS1
iHOPRGPD4-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:06:10 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.