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RGPD4 (RANBP2-like and GRIP domain containing 4)

Identity

Alias_symbol (synonym)RGP4
DKFZp686P0288
Other alias
HGNC (Hugo) RGPD4
LocusID (NCBI) 285190
Atlas_Id 72613
Location 2q12.3  [Link to chromosome band 2q12]
Location_base_pair Starts at 108443388 and ends at 108509000 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RGPD4   32417
Cards
Entrez_Gene (NCBI)RGPD4  285190  RANBP2-like and GRIP domain containing 4
AliasesRGP4
GeneCards (Weizmann)RGPD4
Ensembl hg19 (Hinxton)ENSG00000196862 [Gene_View]  chr2:108443388-108509000 [Contig_View]  RGPD4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000196862 [Gene_View]  chr2:108443388-108509000 [Contig_View]  RGPD4 [Vega]
ICGC DataPortalENSG00000196862
TCGA cBioPortalRGPD4
AceView (NCBI)RGPD4
Genatlas (Paris)RGPD4
WikiGenes285190
SOURCE (Princeton)RGPD4
Genetics Home Reference (NIH)RGPD4
Genomic and cartography
GoldenPath hg19 (UCSC)RGPD4  -     chr2:108443388-108509000 +  2q12.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RGPD4  -     2q12.3   [Description]    (hg38-Dec_2013)
EnsemblRGPD4 - 2q12.3 [CytoView hg19]  RGPD4 - 2q12.3 [CytoView hg38]
Mapping of homologs : NCBIRGPD4 [Mapview hg19]  RGPD4 [Mapview hg38]
OMIM612707   
Gene and transcription
Genbank (Entrez)AK302921 BX537861
RefSeq transcript (Entrez)NM_182588
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929303
Consensus coding sequences : CCDS (NCBI)RGPD4
Cluster EST : UnigeneHs.449164 [ NCBI ]
CGAP (NCI)Hs.449164
Alternative Splicing GalleryENSG00000196862
Gene ExpressionRGPD4 [ NCBI-GEO ]   RGPD4 [ EBI - ARRAY_EXPRESS ]   RGPD4 [ SEEK ]   RGPD4 [ MEM ]
Gene Expression Viewer (FireBrowse)RGPD4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285190
GTEX Portal (Tissue expression)RGPD4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z3J3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z3J3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z3J3
Splice isoforms : SwissVarQ7Z3J3
PhosPhoSitePlusQ7Z3J3
Domaine pattern : Prosite (Expaxy)GRIP (PS50913)    RANBD1 (PS50196)    TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)GRIP    PH_like_dom    Ran_bind_dom    TPR-contain_dom    TPR-like_helical_dom    TPR_1    TPR_repeat   
Domain families : Pfam (Sanger)GRIP (PF01465)    Ran_BP1 (PF00638)    TPR_1 (PF00515)   
Domain families : Pfam (NCBI)pfam01465    pfam00638    pfam00515   
Domain families : Smart (EMBL)Grip (SM00755)  RanBD (SM00160)  
Conserved Domain (NCBI)RGPD4
DMDM Disease mutations285190
Blocks (Seattle)RGPD4
SuperfamilyQ7Z3J3
Human Protein AtlasENSG00000196862
Peptide AtlasQ7Z3J3
IPIIPI00375793   IPI00910777   IPI00979860   IPI00879540   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z3J3
IntAct (EBI)Q7Z3J3
FunCoupENSG00000196862
BioGRIDRGPD4
STRING (EMBL)RGPD4
ZODIACRGPD4
Ontologies - Pathways
QuickGOQ7Z3J3
Ontology : AmiGOprotein targeting to Golgi  intracellular  
Ontology : EGO-EBIprotein targeting to Golgi  intracellular  
Pathways : KEGGRNA transport   
NDEx NetworkRGPD4
Atlas of Cancer Signalling NetworkRGPD4
Wikipedia pathwaysRGPD4
Orthology - Evolution
OrthoDB285190
GeneTree (enSembl)ENSG00000196862
Phylogenetic Trees/Animal Genes : TreeFamRGPD4
HOVERGENQ7Z3J3
HOGENOMQ7Z3J3
Homologs : HomoloGeneRGPD4
Homology/Alignments : Family Browser (UCSC)RGPD4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRGPD4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RGPD4
dbVarRGPD4
ClinVarRGPD4
1000_GenomesRGPD4 
Exome Variant ServerRGPD4
ExAC (Exome Aggregation Consortium)RGPD4 (select the gene name)
Genetic variants : HAPMAP285190
Genomic Variants (DGV)RGPD4 [DGVbeta]
DECIPHER (Syndromes)2:108443388-108509000  ENSG00000196862
CONAN: Copy Number AnalysisRGPD4 
Mutations
ICGC Data PortalRGPD4 
TCGA Data PortalRGPD4 
Broad Tumor PortalRGPD4
OASIS PortalRGPD4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRGPD4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRGPD4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RGPD4
DgiDB (Drug Gene Interaction Database)RGPD4
DoCM (Curated mutations)RGPD4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RGPD4 (select a term)
intoGenRGPD4
Cancer3DRGPD4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612707   
Orphanet
MedgenRGPD4
Genetic Testing Registry RGPD4
NextProtQ7Z3J3 [Medical]
TSGene285190
GENETestsRGPD4
Huge Navigator RGPD4 [HugePedia]
snp3D : Map Gene to Disease285190
BioCentury BCIQRGPD4
ClinGenRGPD4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285190
Chemical/Pharm GKB GenePA142671073
Clinical trialRGPD4
Miscellaneous
canSAR (ICR)RGPD4 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRGPD4
EVEXRGPD4
GoPubMedRGPD4
iHOPRGPD4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:40:59 CET 2017

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