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RGPD5 (RANBP2-like and GRIP domain containing 5)

Identity

Alias_symbol (synonym)RGP5
BS-63
DKFZp686I1842
Other aliasBS63
HEL161
HGNC (Hugo) RGPD5
LocusID (NCBI) 84220
Atlas_Id 72615
Location 2q13  [Link to chromosome band 2q13]
Location_base_pair Starts at 109794389 and ends at 109857686 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C1orf198 (1q42.2) / RGPD5 (2q13)RGPD5 (2q13) / ACACA (17q12)RGPD5 (2q13) / MBP (18q23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RGPD5   32418
Cards
Entrez_Gene (NCBI)RGPD5  84220  RANBP2-like and GRIP domain containing 5
AliasesBS-63; BS63; HEL161; RGP5
GeneCards (Weizmann)RGPD5
Ensembl hg19 (Hinxton)ENSG00000015568 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000015568 [Gene_View]  chr2:109794389-109857686 [Contig_View]  RGPD5 [Vega]
ICGC DataPortalENSG00000015568
TCGA cBioPortalRGPD5
AceView (NCBI)RGPD5
Genatlas (Paris)RGPD5
WikiGenes84220
SOURCE (Princeton)RGPD5
Genetics Home Reference (NIH)RGPD5
Genomic and cartography
GoldenPath hg38 (UCSC)RGPD5  -     chr2:109794389-109857686 +  2q13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RGPD5  -     2q13   [Description]    (hg19-Feb_2009)
EnsemblRGPD5 - 2q13 [CytoView hg19]  RGPD5 - 2q13 [CytoView hg38]
Mapping of homologs : NCBIRGPD5 [Mapview hg19]  RGPD5 [Mapview hg38]
OMIM612708   
Gene and transcription
Genbank (Entrez)AB209082 AL044843 AL136868 BC148413 BU631831
RefSeq transcript (Entrez)NM_005054 NM_032260
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RGPD5
Cluster EST : UnigeneHs.469630 [ NCBI ]
CGAP (NCI)Hs.469630
Alternative Splicing GalleryENSG00000015568
Gene ExpressionRGPD5 [ NCBI-GEO ]   RGPD5 [ EBI - ARRAY_EXPRESS ]   RGPD5 [ SEEK ]   RGPD5 [ MEM ]
Gene Expression Viewer (FireBrowse)RGPD5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84220
GTEX Portal (Tissue expression)RGPD5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99666   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99666  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99666
Splice isoforms : SwissVarQ99666
PhosPhoSitePlusQ99666
Domaine pattern : Prosite (Expaxy)GRIP (PS50913)    RANBD1 (PS50196)    TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)GCC2_Rab_bind    GRIP_dom    PH_dom-like    Ran_bind_dom    TPR-contain_dom    TPR-like_helical_dom    TPR_repeat   
Domain families : Pfam (Sanger)GRIP (PF01465)    Rab_bind (PF16704)    Ran_BP1 (PF00638)   
Domain families : Pfam (NCBI)pfam01465    pfam16704    pfam00638   
Domain families : Smart (EMBL)Grip (SM00755)  RanBD (SM00160)  TPR (SM00028)  
Conserved Domain (NCBI)RGPD5
DMDM Disease mutations84220
Blocks (Seattle)RGPD5
SuperfamilyQ99666
Human Protein AtlasENSG00000015568
Peptide AtlasQ99666
HPRD04128
Protein Interaction databases
DIP (DOE-UCLA)Q99666
IntAct (EBI)Q99666
FunCoupENSG00000015568
BioGRIDRGPD5
STRING (EMBL)RGPD5
ZODIACRGPD5
Ontologies - Pathways
QuickGOQ99666
Ontology : AmiGOprotein targeting to Golgi  cytoplasm  
Ontology : EGO-EBIprotein targeting to Golgi  cytoplasm  
NDEx NetworkRGPD5
Atlas of Cancer Signalling NetworkRGPD5
Wikipedia pathwaysRGPD5
Orthology - Evolution
OrthoDB84220
GeneTree (enSembl)ENSG00000015568
Phylogenetic Trees/Animal Genes : TreeFamRGPD5
HOVERGENQ99666
HOGENOMQ99666
Homologs : HomoloGeneRGPD5
Homology/Alignments : Family Browser (UCSC)RGPD5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRGPD5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RGPD5
dbVarRGPD5
ClinVarRGPD5
1000_GenomesRGPD5 
Exome Variant ServerRGPD5
ExAC (Exome Aggregation Consortium)RGPD5 (select the gene name)
Genetic variants : HAPMAP84220
Genomic Variants (DGV)RGPD5 [DGVbeta]
DECIPHERRGPD5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRGPD5 
Mutations
ICGC Data PortalRGPD5 
TCGA Data PortalRGPD5 
Broad Tumor PortalRGPD5
OASIS PortalRGPD5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRGPD5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRGPD5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RGPD5
DgiDB (Drug Gene Interaction Database)RGPD5
DoCM (Curated mutations)RGPD5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RGPD5 (select a term)
intoGenRGPD5
Cancer3DRGPD5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612708   
Orphanet
MedgenRGPD5
Genetic Testing Registry RGPD5
NextProtQ99666 [Medical]
TSGene84220
GENETestsRGPD5
Target ValidationRGPD5
Huge Navigator RGPD5 [HugePedia]
snp3D : Map Gene to Disease84220
BioCentury BCIQRGPD5
ClinGenRGPD5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84220
Chemical/Pharm GKB GenePA142671074
Clinical trialRGPD5
Miscellaneous
canSAR (ICR)RGPD5 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRGPD5
EVEXRGPD5
GoPubMedRGPD5
iHOPRGPD5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:38:36 CEST 2017

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