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RGPD6 (RANBP2-like and GRIP domain containing 6)

Identity

Alias_symbol (synonym)RGP6
Other aliasRGPD7
RanBP2L1
RanBP2L2
HGNC (Hugo) RGPD6
LocusID (NCBI) 729540
Atlas_Id 72616
Location 2q13  [Link to chromosome band 2q13]
Location_base_pair Starts at 109792758 and ends at 109833019 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RGPD6 (2q13) / VSIG10 (12q24.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RGPD6   32419
Cards
Entrez_Gene (NCBI)RGPD6  729540  RANBP2-like and GRIP domain containing 6
AliasesRGP6; RGPD7; RanBP2L1; RanBP2L2
GeneCards (Weizmann)RGPD6
Ensembl hg19 (Hinxton)ENSG00000183054 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183054 [Gene_View]  chr2:109792758-109833019 [Contig_View]  RGPD6 [Vega]
ICGC DataPortalENSG00000183054
TCGA cBioPortalRGPD6
AceView (NCBI)RGPD6
Genatlas (Paris)RGPD6
WikiGenes729540
SOURCE (Princeton)RGPD6
Genetics Home Reference (NIH)RGPD6
Genomic and cartography
GoldenPath hg38 (UCSC)RGPD6  -     chr2:109792758-109833019 +  2q13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RGPD6  -     2q13   [Description]    (hg19-Feb_2009)
EnsemblRGPD6 - 2q13 [CytoView hg19]  RGPD6 - 2q13 [CytoView hg38]
Mapping of homologs : NCBIRGPD6 [Mapview hg19]  RGPD6 [Mapview hg38]
OMIM612709   
Gene and transcription
Genbank (Entrez)AK056675 BC156282 EF491794
RefSeq transcript (Entrez)NM_001037866 NM_001123363
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RGPD6
Cluster EST : UnigeneHs.645445 [ NCBI ]
CGAP (NCI)Hs.645445
Alternative Splicing GalleryENSG00000183054
Gene ExpressionRGPD6 [ NCBI-GEO ]   RGPD6 [ EBI - ARRAY_EXPRESS ]   RGPD6 [ SEEK ]   RGPD6 [ MEM ]
Gene Expression Viewer (FireBrowse)RGPD6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729540
GTEX Portal (Tissue expression)RGPD6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99666   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99666  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99666
Splice isoforms : SwissVarQ99666
PhosPhoSitePlusQ99666
Domaine pattern : Prosite (Expaxy)GRIP (PS50913)    RANBD1 (PS50196)    TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)GCC2_Rab_bind    GRIP_dom    PH_dom-like    Ran_bind_dom    TPR-contain_dom    TPR-like_helical_dom    TPR_repeat   
Domain families : Pfam (Sanger)GRIP (PF01465)    Rab_bind (PF16704)    Ran_BP1 (PF00638)   
Domain families : Pfam (NCBI)pfam01465    pfam16704    pfam00638   
Domain families : Smart (EMBL)Grip (SM00755)  RanBD (SM00160)  TPR (SM00028)  
Conserved Domain (NCBI)RGPD6
DMDM Disease mutations729540
Blocks (Seattle)RGPD6
SuperfamilyQ99666
Human Protein AtlasENSG00000183054
Peptide AtlasQ99666
IPIIPI00293568   IPI00100787   
Protein Interaction databases
DIP (DOE-UCLA)Q99666
IntAct (EBI)Q99666
FunCoupENSG00000183054
BioGRIDRGPD6
STRING (EMBL)RGPD6
ZODIACRGPD6
Ontologies - Pathways
QuickGOQ99666
Ontology : AmiGOprotein targeting to Golgi  cytoplasm  
Ontology : EGO-EBIprotein targeting to Golgi  cytoplasm  
NDEx NetworkRGPD6
Atlas of Cancer Signalling NetworkRGPD6
Wikipedia pathwaysRGPD6
Orthology - Evolution
OrthoDB729540
GeneTree (enSembl)ENSG00000183054
Phylogenetic Trees/Animal Genes : TreeFamRGPD6
HOVERGENQ99666
HOGENOMQ99666
Homologs : HomoloGeneRGPD6
Homology/Alignments : Family Browser (UCSC)RGPD6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRGPD6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RGPD6
dbVarRGPD6
ClinVarRGPD6
1000_GenomesRGPD6 
Exome Variant ServerRGPD6
ExAC (Exome Aggregation Consortium)RGPD6 (select the gene name)
Genetic variants : HAPMAP729540
Genomic Variants (DGV)RGPD6 [DGVbeta]
DECIPHERRGPD6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRGPD6 
Mutations
ICGC Data PortalRGPD6 
TCGA Data PortalRGPD6 
Broad Tumor PortalRGPD6
OASIS PortalRGPD6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRGPD6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRGPD6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RGPD6
DgiDB (Drug Gene Interaction Database)RGPD6
DoCM (Curated mutations)RGPD6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RGPD6 (select a term)
intoGenRGPD6
Cancer3DRGPD6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612709   
Orphanet
MedgenRGPD6
Genetic Testing Registry RGPD6
NextProtQ99666 [Medical]
TSGene729540
GENETestsRGPD6
Target ValidationRGPD6
Huge Navigator RGPD6 [HugePedia]
snp3D : Map Gene to Disease729540
BioCentury BCIQRGPD6
ClinGenRGPD6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729540
Chemical/Pharm GKB GenePA142671075
Clinical trialRGPD6
Miscellaneous
canSAR (ICR)RGPD6 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRGPD6
EVEXRGPD6
GoPubMedRGPD6
iHOPRGPD6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:36:08 CEST 2017

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