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RGPD8 (RANBP2-like and GRIP domain containing 8)

Identity

Alias_namesRANBP2L1
RAN binding protein 2-like 1
Alias_symbol (synonym)RanBP2alpha
Other aliasRGP8
HGNC (Hugo) RGPD8
LocusID (NCBI) 727851
Atlas_Id 72617
Location 2q13  [Link to chromosome band 2q13]
Location_base_pair Starts at 109794274 and ends at 109857705 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RGPD8   9849
Cards
Entrez_Gene (NCBI)RGPD8  727851  RANBP2-like and GRIP domain containing 8
AliasesRANBP2L1; RGP8; RanBP2alpha
GeneCards (Weizmann)RGPD8
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:109794274-109857705 [Contig_View]  RGPD8 [Vega]
TCGA cBioPortalRGPD8
AceView (NCBI)RGPD8
Genatlas (Paris)RGPD8
WikiGenes727851
SOURCE (Princeton)RGPD8
Genetics Home Reference (NIH)RGPD8
Genomic and cartography
GoldenPath hg38 (UCSC)RGPD8  -     chr2:109794274-109857705 +  2q13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RGPD8  -     2q13   [Description]    (hg19-Feb_2009)
EnsemblRGPD8 - 2q13 [CytoView hg19]  RGPD8 - 2q13 [CytoView hg38]
Mapping of homologs : NCBIRGPD8 [Mapview hg19]  RGPD8 [Mapview hg38]
OMIM602752   
Gene and transcription
Genbank (Entrez)AF012086 BC020901 BC037274
RefSeq transcript (Entrez)NM_001164463
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RGPD8
Cluster EST : UnigeneHs.535589 [ NCBI ]
CGAP (NCI)Hs.535589
Gene ExpressionRGPD8 [ NCBI-GEO ]   RGPD8 [ EBI - ARRAY_EXPRESS ]   RGPD8 [ SEEK ]   RGPD8 [ MEM ]
Gene Expression Viewer (FireBrowse)RGPD8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)727851
GTEX Portal (Tissue expression)RGPD8
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14715   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14715  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14715
Splice isoforms : SwissVarO14715
PhosPhoSitePlusO14715
Domaine pattern : Prosite (Expaxy)GRIP (PS50913)    RANBD1 (PS50196)    TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)GCC2_Rab_bind    GRIP_dom    PH_dom-like    Ran_bind_dom    TPR-contain_dom    TPR-like_helical_dom    TPR_repeat   
Domain families : Pfam (Sanger)GRIP (PF01465)    Rab_bind (PF16704)    Ran_BP1 (PF00638)   
Domain families : Pfam (NCBI)pfam01465    pfam16704    pfam00638   
Domain families : Smart (EMBL)Grip (SM00755)  RanBD (SM00160)  TPR (SM00028)  
Conserved Domain (NCBI)RGPD8
DMDM Disease mutations727851
Blocks (Seattle)RGPD8
SuperfamilyO14715
Peptide AtlasO14715
IPIIPI00917503   IPI00917621   IPI00916370   IPI00916003   IPI01014896   IPI00926400   
Protein Interaction databases
DIP (DOE-UCLA)O14715
IntAct (EBI)O14715
BioGRIDRGPD8
STRING (EMBL)RGPD8
ZODIACRGPD8
Ontologies - Pathways
QuickGOO14715
Ontology : AmiGOprotein targeting to Golgi  nuclear pore  biological_process  Ran GTPase binding  
Ontology : EGO-EBIprotein targeting to Golgi  nuclear pore  biological_process  Ran GTPase binding  
NDEx NetworkRGPD8
Atlas of Cancer Signalling NetworkRGPD8
Wikipedia pathwaysRGPD8
Orthology - Evolution
OrthoDB727851
Phylogenetic Trees/Animal Genes : TreeFamRGPD8
HOVERGENO14715
HOGENOMO14715
Homologs : HomoloGeneRGPD8
Homology/Alignments : Family Browser (UCSC)RGPD8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRGPD8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RGPD8
dbVarRGPD8
ClinVarRGPD8
1000_GenomesRGPD8 
Exome Variant ServerRGPD8
ExAC (Exome Aggregation Consortium)RGPD8 (select the gene name)
Genetic variants : HAPMAP727851
Genomic Variants (DGV)RGPD8 [DGVbeta]
DECIPHERRGPD8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRGPD8 
Mutations
ICGC Data PortalRGPD8 
TCGA Data PortalRGPD8 
Broad Tumor PortalRGPD8
OASIS PortalRGPD8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRGPD8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRGPD8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RGPD8
DgiDB (Drug Gene Interaction Database)RGPD8
DoCM (Curated mutations)RGPD8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RGPD8 (select a term)
intoGenRGPD8
Cancer3DRGPD8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602752   
Orphanet
MedgenRGPD8
Genetic Testing Registry RGPD8
NextProtO14715 [Medical]
TSGene727851
GENETestsRGPD8
Target ValidationRGPD8
Huge Navigator RGPD8 [HugePedia]
snp3D : Map Gene to Disease727851
BioCentury BCIQRGPD8
ClinGenRGPD8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD727851
Chemical/Pharm GKB GenePA34210
Clinical trialRGPD8
Miscellaneous
canSAR (ICR)RGPD8 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRGPD8
EVEXRGPD8
GoPubMedRGPD8
iHOPRGPD8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:36:08 CEST 2017

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