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RGR (retinal G protein coupled receptor)

Identity

Other namesRP44
HGNC (Hugo) RGR
LocusID (NCBI) 5995
Atlas_Id 42098
Location 10q23.1
Location_base_pair Starts at 86004809 and ends at 86018944 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RGR   9990
Cards
Entrez_Gene (NCBI)RGR  5995  retinal G protein coupled receptor
GeneCards (Weizmann)RGR
Ensembl hg19 (Hinxton)ENSG00000148604 [Gene_View]  chr10:86004809-86018944 [Contig_View]  RGR [Vega]
Ensembl hg38 (Hinxton)ENSG00000148604 [Gene_View]  chr10:86004809-86018944 [Contig_View]  RGR [Vega]
ICGC DataPortalENSG00000148604
TCGA cBioPortalRGR
AceView (NCBI)RGR
Genatlas (Paris)RGR
WikiGenes5995
SOURCE (Princeton)RGR
Genomic and cartography
GoldenPath hg19 (UCSC)RGR  -     chr10:86004809-86018944 +  10q23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RGR  -     10q23.1   [Description]    (hg38-Dec_2013)
EnsemblRGR - 10q23.1 [CytoView hg19]  RGR - 10q23.1 [CytoView hg38]
Mapping of homologs : NCBIRGR [Mapview hg19]  RGR [Mapview hg38]
OMIM600342   613769   
Gene and transcription
Genbank (Entrez)BC008094 BC011349 BC027987 BC042536 BG912392
RefSeq transcript (Entrez)NM_001012720 NM_001012722 NM_002921
RefSeq genomic (Entrez)NC_000010 NC_018921 NG_009106 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)RGR
Cluster EST : UnigeneHs.1544 [ NCBI ]
CGAP (NCI)Hs.1544
Alternative Splicing : Fast-db (Paris)GSHG0003514
Alternative Splicing GalleryENSG00000148604
Gene ExpressionRGR [ NCBI-GEO ]   RGR [ EBI - ARRAY_EXPRESS ]   RGR [ SEEK ]   RGR [ MEM ]
Gene Expression Viewer (FireBrowse)RGR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)5995
Protein : pattern, domain, 3D structure
UniProt/SwissProtP47804 (Uniprot)
NextProtP47804  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP47804
Splice isoforms : SwissVarP47804 (Swissvar)
PhosPhoSitePlusP47804
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)    OPSIN (PS00238)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Retinal_BS    RPE_GPCR   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
DMDM Disease mutations5995
Blocks (Seattle)RGR
SuperfamilyP47804
Human Protein AtlasENSG00000148604
Peptide AtlasP47804
HPRD02642
IPIIPI00026539   IPI00843916   IPI00554654   IPI00063275   
Protein Interaction databases
DIP (DOE-UCLA)P47804
IntAct (EBI)P47804
FunCoupENSG00000148604
BioGRIDRGR
STRING (EMBL)RGR
ZODIACRGR
Ontologies - Pathways
QuickGOP47804
Ontology : AmiGOG-protein coupled receptor activity  protein binding  integral component of plasma membrane  G-protein coupled receptor signaling pathway  visual perception  phototransduction  photoreceptor activity  protein-chromophore linkage  
Ontology : EGO-EBIG-protein coupled receptor activity  protein binding  integral component of plasma membrane  G-protein coupled receptor signaling pathway  visual perception  phototransduction  photoreceptor activity  protein-chromophore linkage  
NDEx Network
Atlas of Cancer Signalling NetworkRGR
Wikipedia pathwaysRGR
Orthology - Evolution
OrthoDB5995
GeneTree (enSembl)ENSG00000148604
Phylogenetic Trees/Animal Genes : TreeFamRGR
Homologs : HomoloGeneRGR
Homology/Alignments : Family Browser (UCSC)RGR
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerRGR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RGR
dbVarRGR
ClinVarRGR
1000_GenomesRGR 
Exome Variant ServerRGR
ExAC (Exome Aggregation Consortium)RGR (select the gene name)
SNP (GeneSNP Utah)RGR
SNP : HGBaseRGR
Genetic variants : HAPMAPRGR
Genomic Variants (DGV)RGR [DGVbeta]
Mutations
ICGC Data PortalRGR 
TCGA Data PortalRGR 
Broad Tumor PortalRGR
OASIS PortalRGR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRGR 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
BioMutasearch RGR
DgiDB (Drug Gene Interaction Database)RGR
DoCM (Curated mutations)RGR (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RGR (select a term)
intoGenRGR
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)10:86004809-86018944
CONAN: Copy Number AnalysisRGR 
Mutations and Diseases : HGMDRGR
OMIM600342    613769   
MedgenRGR
Genetic Testing Registry RGR
NextProtP47804 [Medical]
TSGene5995
GENETestsRGR
Huge Navigator RGR [HugePedia]  RGR [HugeCancerGEM]
snp3D : Map Gene to Disease5995
BioCentury BCIQRGR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5995
Chemical/Pharm GKB GenePA34360
Clinical trialRGR
Miscellaneous
canSAR (ICR)RGR (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRGR
GoPubMedRGR
iHOPRGR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Apr 16 18:02:06 CEST 2016

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