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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret jlhuret@AtlasGeneticsOncology.org
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

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RGR (retinal G protein coupled receptor)

Identity

Other namesRP44
HGNC (Hugo) RGR
LocusID (NCBI) 5995
Location 10q23.1
Location_base_pair Starts at 86004809 and ends at 86018944 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RGR   9990
Cards
Entrez_Gene (NCBI)RGR  5995  retinal G protein coupled receptor
GeneCards (Weizmann)RGR
Ensembl hg19 (Hinxton)ENSG00000148604 [Gene_View]  chr10:86004809-86018944 [Contig_View]  RGR [Vega]
Ensembl hg38 (Hinxton)ENSG00000148604 [Gene_View]  chr10:86004809-86018944 [Contig_View]  RGR [Vega]
ICGC DataPortalENSG00000148604
cBioPortalRGR
AceView (NCBI)RGR
Genatlas (Paris)RGR
WikiGenes5995
SOURCE (Princeton)RGR
Genomic and cartography
GoldenPath hg19 (UCSC)RGR  -     chr10:86004809-86018944 +  10q23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RGR  -     10q23.1   [Description]    (hg38-Dec_2013)
EnsemblRGR - 10q23.1 [CytoView hg19]  RGR - 10q23.1 [CytoView hg38]
Mapping of homologs : NCBIRGR [Mapview hg19]  RGR [Mapview hg38]
OMIM600342   613769   
Gene and transcription
Genbank (Entrez)BC008094 BC011349 BC027987 BC042536 BG912392
RefSeq transcript (Entrez)NM_001012720 NM_001012722 NM_002921
RefSeq genomic (Entrez)NC_000010 NC_018921 NG_009106 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)RGR
Cluster EST : UnigeneHs.1544 [ NCBI ]
CGAP (NCI)Hs.1544
Alternative Splicing : Fast-db (Paris)GSHG0003514
Alternative Splicing GalleryENSG00000148604
Gene ExpressionRGR [ NCBI-GEO ]     RGR [ SEEK ]   RGR [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP47804 (Uniprot)
NextProtP47804  [Medical]
With graphics : InterProP47804
Splice isoforms : SwissVarP47804 (Swissvar)
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)    OPSIN (PS00238)   
Domains : Interpro (EBI)Chemokine_rcpt    GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Retinal_BS    RPE_GPCR   
Related proteins : CluSTrP47804
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
DMDM Disease mutations5995
Blocks (Seattle)P47804
Human Protein AtlasENSG00000148604
Peptide AtlasP47804
HPRD02642
IPIIPI00026539   IPI00843916   IPI00554654   IPI00063275   
Protein Interaction databases
DIP (DOE-UCLA)P47804
IntAct (EBI)P47804
FunCoupENSG00000148604
BioGRIDRGR
IntegromeDBRGR
STRING (EMBL)RGR
Ontologies - Pathways
QuickGOP47804
Ontology : AmiGOG-protein coupled receptor activity  chemokine receptor activity  protein binding  integral component of plasma membrane  chemotaxis  G-protein coupled receptor signaling pathway  visual perception  phototransduction  photoreceptor activity  protein-chromophore linkage  chemokine-mediated signaling pathway  
Ontology : EGO-EBIG-protein coupled receptor activity  chemokine receptor activity  protein binding  integral component of plasma membrane  chemotaxis  G-protein coupled receptor signaling pathway  visual perception  phototransduction  photoreceptor activity  protein-chromophore linkage  chemokine-mediated signaling pathway  
Protein Interaction DatabaseRGR
DoCM (Curated mutations)RGR
Wikipedia pathwaysRGR
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerRGR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RGR
dbVarRGR
ClinVarRGR
1000_GenomesRGR 
Exome Variant ServerRGR
SNP (GeneSNP Utah)RGR
SNP : HGBaseRGR
Genetic variants : HAPMAPRGR
Genomic Variants (DGV)RGR [DGVbeta]
Mutations
ICGC Data PortalENSG00000148604 
Somatic Mutations in Cancer : COSMICRGR 
CONAN: Copy Number AnalysisRGR 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)10:86004809-86018944
Mutations and Diseases : HGMDRGR
OMIM600342    613769   
MedgenRGR
NextProtP47804 [Medical]
GENETestsRGR
Disease Genetic AssociationRGR
Huge Navigator RGR [HugePedia]  RGR [HugeCancerGEM]
snp3D : Map Gene to Disease5995
DGIdb (Drug Gene Interaction db)RGR
General knowledge
Homologs : HomoloGeneRGR
Homology/Alignments : Family Browser (UCSC)RGR
Phylogenetic Trees/Animal Genes : TreeFamRGR
Chemical/Protein Interactions : CTD5995
Chemical/Pharm GKB GenePA34360
Clinical trialRGR
Cancer Resource (Charite)ENSG00000148604
Other databases
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
CoreMineRGR
GoPubMedRGR
iHOPRGR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 17:07:52 CET 2015

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For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.