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RGR (retinal G protein coupled receptor)

Identity

Alias (NCBI)RP44
HGNC (Hugo) RGR
HGNC Alias symbRP44
HGNC Alias nameRGR-opsin
LocusID (NCBI) 5995
Atlas_Id 42098
Location 10q23.1  [Link to chromosome band 10q23]
Location_base_pair Starts at 84245053 and ends at 84259188 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RGR   9990
Cards
Entrez_Gene (NCBI)RGR    retinal G protein coupled receptor
AliasesRP44
GeneCards (Weizmann)RGR
Ensembl hg19 (Hinxton)ENSG00000148604 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148604 [Gene_View]  ENSG00000148604 [Sequence]  chr10:84245053-84259188 [Contig_View]  RGR [Vega]
ICGC DataPortalENSG00000148604
TCGA cBioPortalRGR
AceView (NCBI)RGR
Genatlas (Paris)RGR
SOURCE (Princeton)RGR
Genetics Home Reference (NIH)RGR
Genomic and cartography
GoldenPath hg38 (UCSC)RGR  -     chr10:84245053-84259188 +  10q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RGR  -     10q23.1   [Description]    (hg19-Feb_2009)
GoldenPathRGR - 10q23.1 [CytoView hg19]  RGR - 10q23.1 [CytoView hg38]
ImmunoBaseENSG00000148604
Genome Data Viewer NCBIRGR [Mapview hg19]  
OMIM600342   613769   
Gene and transcription
Genbank (Entrez)BC008094 BC011349 BC027987 BC042536 BG912392
RefSeq transcript (Entrez)NM_001012720 NM_001012722 NM_002921
Consensus coding sequences : CCDS (NCBI)RGR
Gene ExpressionRGR [ NCBI-GEO ]   RGR [ EBI - ARRAY_EXPRESS ]   RGR [ SEEK ]   RGR [ MEM ]
Gene Expression Viewer (FireBrowse)RGR [ Firebrowse - Broad ]
GenevisibleExpression of RGR in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5995
GTEX Portal (Tissue expression)RGR
Human Protein AtlasENSG00000148604-RGR [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP47804   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP47804  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP47804
PhosPhoSitePlusP47804
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)    OPSIN (PS00238)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Retinal_BS    RPE_GPCR   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Conserved Domain (NCBI)RGR
SuperfamilyP47804
AlphaFold pdb e-kbP47804   
Human Protein Atlas [tissue]ENSG00000148604-RGR [tissue]
HPRD02642
Protein Interaction databases
DIP (DOE-UCLA)P47804
IntAct (EBI)P47804
BioGRIDRGR
STRING (EMBL)RGR
ZODIACRGR
Ontologies - Pathways
QuickGOP47804
Ontology : AmiGOphotoreceptor outer segment  G protein-coupled receptor activity  protein binding  integral component of plasma membrane  G protein-coupled receptor signaling pathway  visual perception  phototransduction  G protein-coupled photoreceptor activity  detection of visible light  protein-chromophore linkage  cellular response to light stimulus  
Ontology : EGO-EBIphotoreceptor outer segment  G protein-coupled receptor activity  protein binding  integral component of plasma membrane  G protein-coupled receptor signaling pathway  visual perception  phototransduction  G protein-coupled photoreceptor activity  detection of visible light  protein-chromophore linkage  cellular response to light stimulus  
NDEx NetworkRGR
Atlas of Cancer Signalling NetworkRGR
Wikipedia pathwaysRGR
Orthology - Evolution
OrthoDB5995
GeneTree (enSembl)ENSG00000148604
Phylogenetic Trees/Animal Genes : TreeFamRGR
Homologs : HomoloGeneRGR
Homology/Alignments : Family Browser (UCSC)RGR
Gene fusions - Rearrangements
Fusion : QuiverRGR
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRGR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RGR
dbVarRGR
ClinVarRGR
MonarchRGR
1000_GenomesRGR 
Exome Variant ServerRGR
GNOMAD BrowserENSG00000148604
Varsome BrowserRGR
ACMGRGR variants
VarityP47804
Genomic Variants (DGV)RGR [DGVbeta]
DECIPHERRGR [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRGR 
Mutations
ICGC Data PortalRGR 
TCGA Data PortalRGR 
Broad Tumor PortalRGR
OASIS PortalRGR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRGR  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRGR
Mutations and Diseases : HGMDRGR
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRGR
DgiDB (Drug Gene Interaction Database)RGR
DoCM (Curated mutations)RGR
CIViC (Clinical Interpretations of Variants in Cancer)RGR
Cancer3DRGR
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600342    613769   
Orphanet659   
DisGeNETRGR
MedgenRGR
Genetic Testing Registry RGR
NextProtP47804 [Medical]
GENETestsRGR
Target ValidationRGR
Huge Navigator RGR [HugePedia]
ClinGenRGR
Clinical trials, drugs, therapy
MyCancerGenomeRGR
Protein Interactions : CTDRGR
Pharm GKB GenePA34360
PharosP47804
Clinical trialRGR
Miscellaneous
canSAR (ICR)RGR
HarmonizomeRGR
DataMed IndexRGR
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRGR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:28:49 CEST 2021

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