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RGR (retinal G protein coupled receptor)

Identity

Other namesRP44
HGNC (Hugo) RGR
LocusID (NCBI) 5995
Location 10q23.1
Location_base_pair Starts at 86004809 and ends at 86018944 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RGR   9990
Cards
Entrez_Gene (NCBI)RGR  5995  retinal G protein coupled receptor
GeneCards (Weizmann)RGR
Ensembl (Hinxton) [Gene_View]  chr10:86004809-86018944 [Contig_View]  RGR [Vega]
cBioPortalRGR
AceView (NCBI)RGR
Genatlas (Paris)RGR
WikiGenes5995
SOURCE (Princeton)NM_001012720 NM_001012722 NM_002921
Genomic and cartography
GoldenPath (UCSC)RGR  -  10q23.1   chr10:86004809-86018944 +  10q23.1   [Description]    (hg19-Feb_2009)
EnsemblRGR - 10q23.1 [CytoView]
Mapping of homologs : NCBIRGR [Mapview]
OMIM600342   613769   
Gene and transcription
Genbank (Entrez)BC008094 BC011349 BC027987 BC042536 BG912392
RefSeq transcript (Entrez)NM_001012720 NM_001012722 NM_002921
RefSeq genomic (Entrez)AC_000142 NC_000010 NC_018921 NG_009106 NT_030059 NW_001837991 NW_004929376
Consensus coding sequences : CCDS (NCBI)RGR
Cluster EST : UnigeneHs.1544 [ NCBI ]
CGAP (NCI)Hs.1544
Alternative Splicing : Fast-db (Paris)GSHG0003514
Gene ExpressionRGR [ NCBI-GEO ]     RGR [ SEEK ]   RGR [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP47804 (Uniprot)
NextProtP47804  [Medical]
With graphics : InterProP47804
Splice isoforms : SwissVarP47804 (Swissvar)
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)    OPSIN (PS00238)   
Domains : Interpro (EBI)Chemokine_rcpt [organisation]   GPCR_Rhodpsn [organisation]   GPCR_Rhodpsn_7TM [organisation]   Retinal_BS [organisation]   RPE_GPCR [organisation]  
Related proteins : CluSTrP47804
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
DMDM Disease mutations5995
Blocks (Seattle)P47804
Peptide AtlasP47804
HPRD02642
IPIIPI00026539   IPI00843916   IPI00554654   IPI00063275   
Protein Interaction databases
DIP (DOE-UCLA)P47804
IntAct (EBI)P47804
BioGRIDRGR
InParanoidP47804
Interologous Interaction database P47804
IntegromeDBRGR
STRING (EMBL)RGR
Ontologies - Pathways
Ontology : AmiGOG-protein coupled receptor activity  chemokine receptor activity  protein binding  integral component of plasma membrane  chemotaxis  G-protein coupled receptor signaling pathway  visual perception  phototransduction  photoreceptor activity  protein-chromophore linkage  chemokine-mediated signaling pathway  
Ontology : EGO-EBIG-protein coupled receptor activity  chemokine receptor activity  protein binding  integral component of plasma membrane  chemotaxis  G-protein coupled receptor signaling pathway  visual perception  phototransduction  photoreceptor activity  protein-chromophore linkage  chemokine-mediated signaling pathway  
Protein Interaction DatabaseRGR
Wikipedia pathwaysRGR
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)RGR
snp3D : Map Gene to Disease5995
SNP (GeneSNP Utah)RGR
SNP : HGBaseRGR
Genetic variants : HAPMAPRGR
Exome VariantRGR
1000_GenomesRGR 
Somatic Mutations in Cancer : COSMICRGR 
CONAN: Copy Number AnalysisRGR 
Mutations and Diseases : HGMDRGR
Genomic VariantsRGR  RGR [DGVbeta]
dbVarRGR
ClinVarRGR
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM600342    613769   
MedgenRGR
GENETestsRGR
Disease Genetic AssociationRGR
Huge Navigator RGR [HugePedia]  RGR [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneRGR
Homology/Alignments : Family Browser (UCSC)RGR
Phylogenetic Trees/Animal Genes : TreeFamRGR
Chemical/Protein Interactions : CTD5995
Chemical/Pharm GKB GenePA34360
Clinical trialRGR
Other databases
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
CoreMineRGR
iHOPRGR
OncoSearchRGR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Jul 26 14:45:52 CEST 2014

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