Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RGS11 (regulator of G-protein signaling 11)

Identity

Alias_namesregulator of G-protein signalling 11
HGNC (Hugo) RGS11
LocusID (NCBI) 8786
Atlas_Id 47277
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 318300 and ends at 325943 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RGS11   9993
Cards
Entrez_Gene (NCBI)RGS11  8786  regulator of G-protein signaling 11
AliasesRS11
GeneCards (Weizmann)RGS11
Ensembl hg19 (Hinxton)ENSG00000076344 [Gene_View]  chr16:318300-325943 [Contig_View]  RGS11 [Vega]
Ensembl hg38 (Hinxton)ENSG00000076344 [Gene_View]  chr16:318300-325943 [Contig_View]  RGS11 [Vega]
ICGC DataPortalENSG00000076344
TCGA cBioPortalRGS11
AceView (NCBI)RGS11
Genatlas (Paris)RGS11
WikiGenes8786
SOURCE (Princeton)RGS11
Genetics Home Reference (NIH)RGS11
Genomic and cartography
GoldenPath hg19 (UCSC)RGS11  -     chr16:318300-325943 -  16p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RGS11  -     16p13.3   [Description]    (hg38-Dec_2013)
EnsemblRGS11 - 16p13.3 [CytoView hg19]  RGS11 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIRGS11 [Mapview hg19]  RGS11 [Mapview hg38]
OMIM603895   
Gene and transcription
Genbank (Entrez)AB016929 AB209582 AF035153 AF035154 AK091701
RefSeq transcript (Entrez)NM_001286485 NM_001286486 NM_003834 NM_183337
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010393 NW_004929400
Consensus coding sequences : CCDS (NCBI)RGS11
Cluster EST : UnigeneHs.65756 [ NCBI ]
CGAP (NCI)Hs.65756
Alternative Splicing GalleryENSG00000076344
Gene ExpressionRGS11 [ NCBI-GEO ]   RGS11 [ EBI - ARRAY_EXPRESS ]   RGS11 [ SEEK ]   RGS11 [ MEM ]
Gene Expression Viewer (FireBrowse)RGS11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8786
GTEX Portal (Tissue expression)RGS11
Protein : pattern, domain, 3D structure
UniProt/SwissProtO94810   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO94810  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO94810
Splice isoforms : SwissVarO94810
PhosPhoSitePlusO94810
Domaine pattern : Prosite (Expaxy)DEP (PS50186)    RGS (PS50132)   
Domains : Interpro (EBI)DEP_dom    G-protein_gamma-like_dom    RGS    RGS_subdom1    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)DEP (PF00610)    G-gamma (PF00631)    RGS (PF00615)   
Domain families : Pfam (NCBI)pfam00610    pfam00631    pfam00615   
Domain families : Smart (EMBL)DEP (SM00049)  GGL (SM00224)  RGS (SM00315)  
Conserved Domain (NCBI)RGS11
DMDM Disease mutations8786
Blocks (Seattle)RGS11
SuperfamilyO94810
Human Protein AtlasENSG00000076344
Peptide AtlasO94810
HPRD04872
IPIIPI00015558   IPI00642088   IPI00922446   IPI00922405   IPI00556312   IPI00383458   IPI00375014   IPI00855802   
Protein Interaction databases
DIP (DOE-UCLA)O94810
IntAct (EBI)O94810
FunCoupENSG00000076344
BioGRIDRGS11
STRING (EMBL)RGS11
ZODIACRGS11
Ontologies - Pathways
QuickGOO94810
Ontology : AmiGOsignal transducer activity  GTPase activator activity  cytoplasm  heterotrimeric G-protein complex  plasma membrane  G-protein coupled receptor signaling pathway  regulation of G-protein coupled receptor protein signaling pathway  negative regulation of signal transduction  G-protein beta-subunit binding  intracellular signal transduction  protein complex  positive regulation of GTPase activity  
Ontology : EGO-EBIsignal transducer activity  GTPase activator activity  cytoplasm  heterotrimeric G-protein complex  plasma membrane  G-protein coupled receptor signaling pathway  regulation of G-protein coupled receptor protein signaling pathway  negative regulation of signal transduction  G-protein beta-subunit binding  intracellular signal transduction  protein complex  positive regulation of GTPase activity  
NDEx NetworkRGS11
Atlas of Cancer Signalling NetworkRGS11
Wikipedia pathwaysRGS11
Orthology - Evolution
OrthoDB8786
GeneTree (enSembl)ENSG00000076344
Phylogenetic Trees/Animal Genes : TreeFamRGS11
HOVERGENO94810
HOGENOMO94810
Homologs : HomoloGeneRGS11
Homology/Alignments : Family Browser (UCSC)RGS11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRGS11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RGS11
dbVarRGS11
ClinVarRGS11
1000_GenomesRGS11 
Exome Variant ServerRGS11
ExAC (Exome Aggregation Consortium)RGS11 (select the gene name)
Genetic variants : HAPMAP8786
Genomic Variants (DGV)RGS11 [DGVbeta]
DECIPHER (Syndromes)16:318300-325943  ENSG00000076344
CONAN: Copy Number AnalysisRGS11 
Mutations
ICGC Data PortalRGS11 
TCGA Data PortalRGS11 
Broad Tumor PortalRGS11
OASIS PortalRGS11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRGS11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRGS11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RGS11
DgiDB (Drug Gene Interaction Database)RGS11
DoCM (Curated mutations)RGS11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RGS11 (select a term)
intoGenRGS11
Cancer3DRGS11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603895   
Orphanet
MedgenRGS11
Genetic Testing Registry RGS11
NextProtO94810 [Medical]
TSGene8786
GENETestsRGS11
Huge Navigator RGS11 [HugePedia]
snp3D : Map Gene to Disease8786
BioCentury BCIQRGS11
ClinGenRGS11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8786
Chemical/Pharm GKB GenePA34363
Clinical trialRGS11
Miscellaneous
canSAR (ICR)RGS11 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRGS11
EVEXRGS11
GoPubMedRGS11
iHOPRGS11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Nov 18 19:49:50 CET 2016

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.