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RGS13 (regulator of G protein signaling 13)

Identity

Alias_namesregulator of G-protein signalling 13
Other alias-
HGNC (Hugo) RGS13
LocusID (NCBI) 6003
Atlas_Id 43608
Location 1q31.2  [Link to chromosome band 1q31]
Location_base_pair Starts at 192636138 and ends at 192660310 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RGS13   9995
Cards
Entrez_Gene (NCBI)RGS13  6003  regulator of G protein signaling 13
Aliases
GeneCards (Weizmann)RGS13
Ensembl hg19 (Hinxton)ENSG00000127074 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000127074 [Gene_View]  chr1:192636138-192660310 [Contig_View]  RGS13 [Vega]
ICGC DataPortalENSG00000127074
TCGA cBioPortalRGS13
AceView (NCBI)RGS13
Genatlas (Paris)RGS13
WikiGenes6003
SOURCE (Princeton)RGS13
Genetics Home Reference (NIH)RGS13
Genomic and cartography
GoldenPath hg38 (UCSC)RGS13  -     chr1:192636138-192660310 +  1q31.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RGS13  -     1q31.2   [Description]    (hg19-Feb_2009)
EnsemblRGS13 - 1q31.2 [CytoView hg19]  RGS13 - 1q31.2 [CytoView hg38]
Mapping of homologs : NCBIRGS13 [Mapview hg19]  RGS13 [Mapview hg38]
OMIM607190   
Gene and transcription
Genbank (Entrez)AF030107 AF493935 AY562947 BC016667 BC036950
RefSeq transcript (Entrez)NM_002927 NM_144766
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RGS13
Cluster EST : UnigeneHs.497220 [ NCBI ]
CGAP (NCI)Hs.497220
Alternative Splicing GalleryENSG00000127074
Gene ExpressionRGS13 [ NCBI-GEO ]   RGS13 [ EBI - ARRAY_EXPRESS ]   RGS13 [ SEEK ]   RGS13 [ MEM ]
Gene Expression Viewer (FireBrowse)RGS13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6003
GTEX Portal (Tissue expression)RGS13
Human Protein AtlasENSG00000127074-RGS13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14921   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14921  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14921
Splice isoforms : SwissVarO14921
PhosPhoSitePlusO14921
Domaine pattern : Prosite (Expaxy)RGS (PS50132)   
Domains : Interpro (EBI)RGS    RGS_subdom1   
Domain families : Pfam (Sanger)RGS (PF00615)   
Domain families : Pfam (NCBI)pfam00615   
Domain families : Smart (EMBL)RGS (SM00315)  
Conserved Domain (NCBI)RGS13
DMDM Disease mutations6003
Blocks (Seattle)RGS13
SuperfamilyO14921
Human Protein Atlas [tissue]ENSG00000127074-RGS13 [tissue]
Peptide AtlasO14921
HPRD06222
IPIIPI00024710   
Protein Interaction databases
DIP (DOE-UCLA)O14921
IntAct (EBI)O14921
FunCoupENSG00000127074
BioGRIDRGS13
STRING (EMBL)RGS13
ZODIACRGS13
Ontologies - Pathways
QuickGOO14921
Ontology : AmiGOGTPase activator activity  nucleus  cytoplasm  cytosol  plasma membrane  G-protein coupled receptor signaling pathway  positive regulation of GTPase activity  negative regulation of G-protein coupled receptor protein signaling pathway  
Ontology : EGO-EBIGTPase activator activity  nucleus  cytoplasm  cytosol  plasma membrane  G-protein coupled receptor signaling pathway  positive regulation of GTPase activity  negative regulation of G-protein coupled receptor protein signaling pathway  
NDEx NetworkRGS13
Atlas of Cancer Signalling NetworkRGS13
Wikipedia pathwaysRGS13
Orthology - Evolution
OrthoDB6003
GeneTree (enSembl)ENSG00000127074
Phylogenetic Trees/Animal Genes : TreeFamRGS13
HOVERGENO14921
HOGENOMO14921
Homologs : HomoloGeneRGS13
Homology/Alignments : Family Browser (UCSC)RGS13
Gene fusions - Rearrangements
Tumor Fusion PortalRGS13
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRGS13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RGS13
dbVarRGS13
ClinVarRGS13
1000_GenomesRGS13 
Exome Variant ServerRGS13
ExAC (Exome Aggregation Consortium)ENSG00000127074
GNOMAD BrowserENSG00000127074
Genetic variants : HAPMAP6003
Genomic Variants (DGV)RGS13 [DGVbeta]
DECIPHERRGS13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRGS13 
Mutations
ICGC Data PortalRGS13 
TCGA Data PortalRGS13 
Broad Tumor PortalRGS13
OASIS PortalRGS13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRGS13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRGS13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RGS13
DgiDB (Drug Gene Interaction Database)RGS13
DoCM (Curated mutations)RGS13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RGS13 (select a term)
intoGenRGS13
Cancer3DRGS13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607190   
Orphanet
DisGeNETRGS13
MedgenRGS13
Genetic Testing Registry RGS13
NextProtO14921 [Medical]
TSGene6003
GENETestsRGS13
Target ValidationRGS13
Huge Navigator RGS13 [HugePedia]
snp3D : Map Gene to Disease6003
BioCentury BCIQRGS13
ClinGenRGS13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6003
Chemical/Pharm GKB GenePA34365
Clinical trialRGS13
Miscellaneous
canSAR (ICR)RGS13 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRGS13
EVEXRGS13
GoPubMedRGS13
iHOPRGS13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:32:17 CET 2017

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