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RGS19 (regulator of G protein signaling 19)

Identity

Alias_namesregulator of G-protein signalling 19
Alias_symbol (synonym)GAIP
RGSGAIP
Other alias
HGNC (Hugo) RGS19
LocusID (NCBI) 10287
Atlas_Id 46896
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 64073181 and ends at 64079971 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NFKBIZ (3q12.3) / RGS19 (20q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RGS19   13735
Cards
Entrez_Gene (NCBI)RGS19  10287  regulator of G protein signaling 19
AliasesGAIP; RGSGAIP
GeneCards (Weizmann)RGS19
Ensembl hg19 (Hinxton)ENSG00000171700 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171700 [Gene_View]  chr20:64073181-64079971 [Contig_View]  RGS19 [Vega]
ICGC DataPortalENSG00000171700
TCGA cBioPortalRGS19
AceView (NCBI)RGS19
Genatlas (Paris)RGS19
WikiGenes10287
SOURCE (Princeton)RGS19
Genetics Home Reference (NIH)RGS19
Genomic and cartography
GoldenPath hg38 (UCSC)RGS19  -     chr20:64073181-64079971 -  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RGS19  -     20q13.33   [Description]    (hg19-Feb_2009)
EnsemblRGS19 - 20q13.33 [CytoView hg19]  RGS19 - 20q13.33 [CytoView hg38]
Mapping of homologs : NCBIRGS19 [Mapview hg19]  RGS19 [Mapview hg38]
OMIM605071   
Gene and transcription
Genbank (Entrez)AF285096 AF285097 AF493939 AK290081 AK298240
RefSeq transcript (Entrez)NM_001039467 NM_005873
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RGS19
Cluster EST : UnigeneHs.422336 [ NCBI ]
CGAP (NCI)Hs.422336
Alternative Splicing GalleryENSG00000171700
Gene ExpressionRGS19 [ NCBI-GEO ]   RGS19 [ EBI - ARRAY_EXPRESS ]   RGS19 [ SEEK ]   RGS19 [ MEM ]
Gene Expression Viewer (FireBrowse)RGS19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10287
GTEX Portal (Tissue expression)RGS19
Protein : pattern, domain, 3D structure
UniProt/SwissProtP49795   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP49795  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP49795
Splice isoforms : SwissVarP49795
PhosPhoSitePlusP49795
Domaine pattern : Prosite (Expaxy)RGS (PS50132)   
Domains : Interpro (EBI)RGS    RGS_subdom1   
Domain families : Pfam (Sanger)RGS (PF00615)   
Domain families : Pfam (NCBI)pfam00615   
Domain families : Smart (EMBL)RGS (SM00315)  
Conserved Domain (NCBI)RGS19
DMDM Disease mutations10287
Blocks (Seattle)RGS19
PDB (SRS)1CMZ   
PDB (PDBSum)1CMZ   
PDB (IMB)1CMZ   
PDB (RSDB)1CMZ   
Structural Biology KnowledgeBase1CMZ   
SCOP (Structural Classification of Proteins)1CMZ   
CATH (Classification of proteins structures)1CMZ   
SuperfamilyP49795
Human Protein AtlasENSG00000171700
Peptide AtlasP49795
HPRD05461
IPIIPI00028108   
Protein Interaction databases
DIP (DOE-UCLA)P49795
IntAct (EBI)P49795
FunCoupENSG00000171700
BioGRIDRGS19
STRING (EMBL)RGS19
ZODIACRGS19
Ontologies - Pathways
QuickGOP49795
Ontology : AmiGOG-protein alpha-subunit binding  GTPase activator activity  protein binding  Golgi apparatus  heterotrimeric G-protein complex  brush border  autophagy  G-protein coupled receptor signaling pathway  small GTPase mediated signal transduction  negative regulation of signal transduction  membrane  clathrin-coated vesicle  cytoplasmic vesicle  positive regulation of GTPase activity  membrane raft  
Ontology : EGO-EBIG-protein alpha-subunit binding  GTPase activator activity  protein binding  Golgi apparatus  heterotrimeric G-protein complex  brush border  autophagy  G-protein coupled receptor signaling pathway  small GTPase mediated signal transduction  negative regulation of signal transduction  membrane  clathrin-coated vesicle  cytoplasmic vesicle  positive regulation of GTPase activity  membrane raft  
NDEx NetworkRGS19
Atlas of Cancer Signalling NetworkRGS19
Wikipedia pathwaysRGS19
Orthology - Evolution
OrthoDB10287
GeneTree (enSembl)ENSG00000171700
Phylogenetic Trees/Animal Genes : TreeFamRGS19
HOVERGENP49795
HOGENOMP49795
Homologs : HomoloGeneRGS19
Homology/Alignments : Family Browser (UCSC)RGS19
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRGS19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RGS19
dbVarRGS19
ClinVarRGS19
1000_GenomesRGS19 
Exome Variant ServerRGS19
ExAC (Exome Aggregation Consortium)RGS19 (select the gene name)
Genetic variants : HAPMAP10287
Genomic Variants (DGV)RGS19 [DGVbeta]
DECIPHERRGS19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRGS19 
Mutations
ICGC Data PortalRGS19 
TCGA Data PortalRGS19 
Broad Tumor PortalRGS19
OASIS PortalRGS19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRGS19  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRGS19
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RGS19
DgiDB (Drug Gene Interaction Database)RGS19
DoCM (Curated mutations)RGS19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RGS19 (select a term)
intoGenRGS19
Cancer3DRGS19(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605071   
Orphanet
MedgenRGS19
Genetic Testing Registry RGS19
NextProtP49795 [Medical]
TSGene10287
GENETestsRGS19
Target ValidationRGS19
Huge Navigator RGS19 [HugePedia]
snp3D : Map Gene to Disease10287
BioCentury BCIQRGS19
ClinGenRGS19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10287
Chemical/Pharm GKB GenePA34370
Clinical trialRGS19
Miscellaneous
canSAR (ICR)RGS19 (select the gene name)
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRGS19
EVEXRGS19
GoPubMedRGS19
iHOPRGS19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:05:45 CEST 2017

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