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RGS22 (regulator of G-protein signaling 22)

Identity

Alias_namesregulator of G-protein signalling 22
Alias_symbol (synonym)DKFZP434I092
PRTD-NY2
CT145
Other alias
HGNC (Hugo) RGS22
LocusID (NCBI) 26166
Atlas_Id 50620
Location 8q22.2  [Link to chromosome band 8q22]
Location_base_pair Starts at 100973166 and ends at 101118344 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
COX6C (8q22.2) / RGS22 (8q22.2)DGKA (12q13.2) / RGS22 (8q22.2)RGS22 (8q22.2) / LDHC (11p15.1)
RGS22 (8q22.2) / SYCP1 (1p13.2)RGS22 8q22.2 / SYCP1 1p13.2COX6C 8q22.2 / RGS22 8q22.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RGS22   24499
Cards
Entrez_Gene (NCBI)RGS22  26166  regulator of G-protein signaling 22
AliasesCT145; PRTD-NY2
GeneCards (Weizmann)RGS22
Ensembl hg19 (Hinxton)ENSG00000132554 [Gene_View]  chr8:100973166-101118344 [Contig_View]  RGS22 [Vega]
Ensembl hg38 (Hinxton)ENSG00000132554 [Gene_View]  chr8:100973166-101118344 [Contig_View]  RGS22 [Vega]
ICGC DataPortalENSG00000132554
TCGA cBioPortalRGS22
AceView (NCBI)RGS22
Genatlas (Paris)RGS22
WikiGenes26166
SOURCE (Princeton)RGS22
Genetics Home Reference (NIH)RGS22
Genomic and cartography
GoldenPath hg19 (UCSC)RGS22  -     chr8:100973166-101118344 -  8q22.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RGS22  -     8q22.2   [Description]    (hg38-Dec_2013)
EnsemblRGS22 - 8q22.2 [CytoView hg19]  RGS22 - 8q22.2 [CytoView hg38]
Mapping of homologs : NCBIRGS22 [Mapview hg19]  RGS22 [Mapview hg38]
OMIM615650   
Gene and transcription
Genbank (Entrez)AK097399 AK292559 AK302475 AK309194 AL117544
RefSeq transcript (Entrez)NM_001286692 NM_001286693 NM_015668
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008046 NW_004929340
Consensus coding sequences : CCDS (NCBI)RGS22
Cluster EST : UnigeneHs.120021 [ NCBI ]
CGAP (NCI)Hs.120021
Alternative Splicing GalleryENSG00000132554
Gene ExpressionRGS22 [ NCBI-GEO ]   RGS22 [ EBI - ARRAY_EXPRESS ]   RGS22 [ SEEK ]   RGS22 [ MEM ]
Gene Expression Viewer (FireBrowse)RGS22 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26166
GTEX Portal (Tissue expression)RGS22
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NE09   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NE09  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NE09
Splice isoforms : SwissVarQ8NE09
PhosPhoSitePlusQ8NE09
Domaine pattern : Prosite (Expaxy)RGS (PS50132)   
Domains : Interpro (EBI)RGS   
Domain families : Pfam (Sanger)RGS (PF00615)   
Domain families : Pfam (NCBI)pfam00615   
Domain families : Smart (EMBL)RGS (SM00315)  
Conserved Domain (NCBI)RGS22
DMDM Disease mutations26166
Blocks (Seattle)RGS22
SuperfamilyQ8NE09
Human Protein AtlasENSG00000132554
Peptide AtlasQ8NE09
HPRD13155
IPIIPI00257450   IPI00792464   IPI00910546   IPI00798062   IPI00790815   IPI00982608   IPI01013260   IPI00974361   IPI00973804   IPI01011753   
Protein Interaction databases
DIP (DOE-UCLA)Q8NE09
IntAct (EBI)Q8NE09
FunCoupENSG00000132554
BioGRIDRGS22
STRING (EMBL)RGS22
ZODIACRGS22
Ontologies - Pathways
QuickGOQ8NE09
Ontology : AmiGOGTPase activator activity  nucleus  cytoplasm  plasma membrane  negative regulation of signal transduction  positive regulation of GTPase activity  
Ontology : EGO-EBIGTPase activator activity  nucleus  cytoplasm  plasma membrane  negative regulation of signal transduction  positive regulation of GTPase activity  
NDEx NetworkRGS22
Atlas of Cancer Signalling NetworkRGS22
Wikipedia pathwaysRGS22
Orthology - Evolution
OrthoDB26166
GeneTree (enSembl)ENSG00000132554
Phylogenetic Trees/Animal Genes : TreeFamRGS22
HOVERGENQ8NE09
HOGENOMQ8NE09
Homologs : HomoloGeneRGS22
Homology/Alignments : Family Browser (UCSC)RGS22
Gene fusions - Rearrangements
Fusion : MitelmanCOX6C/RGS22 [8q22.2/8q22.2]  [t(8;8)(q22;q22)]  
Fusion : MitelmanRGS22/SYCP1 [8q22.2/1p13.2]  [t(1;8)(p13;q22)]  
Fusion: TCGACOX6C 8q22.2 RGS22 8q22.2 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRGS22 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RGS22
dbVarRGS22
ClinVarRGS22
1000_GenomesRGS22 
Exome Variant ServerRGS22
ExAC (Exome Aggregation Consortium)RGS22 (select the gene name)
Genetic variants : HAPMAP26166
Genomic Variants (DGV)RGS22 [DGVbeta]
DECIPHER (Syndromes)8:100973166-101118344  ENSG00000132554
CONAN: Copy Number AnalysisRGS22 
Mutations
ICGC Data PortalRGS22 
TCGA Data PortalRGS22 
Broad Tumor PortalRGS22
OASIS PortalRGS22 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRGS22  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRGS22
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RGS22
DgiDB (Drug Gene Interaction Database)RGS22
DoCM (Curated mutations)RGS22 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RGS22 (select a term)
intoGenRGS22
Cancer3DRGS22(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615650   
Orphanet
MedgenRGS22
Genetic Testing Registry RGS22
NextProtQ8NE09 [Medical]
TSGene26166
GENETestsRGS22
Huge Navigator RGS22 [HugePedia]
snp3D : Map Gene to Disease26166
BioCentury BCIQRGS22
ClinGenRGS22
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26166
Chemical/Pharm GKB GenePA142671068
Clinical trialRGS22
Miscellaneous
canSAR (ICR)RGS22 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRGS22
EVEXRGS22
GoPubMedRGS22
iHOPRGS22
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:24:58 CET 2017

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