Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RGS7BP (regulator of G protein signaling 7 binding protein)

Identity

Alias_namesregulator of G-protein signalling 7 binding protein
Alias_symbol (synonym)R7BP
Other alias
HGNC (Hugo) RGS7BP
LocusID (NCBI) 401190
Atlas_Id 72619
Location 5q12.3  [Link to chromosome band 5q12]
Location_base_pair Starts at 64505947 and ends at 64612294 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PDE4D (5q11.2) / RGS7BP (5q12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RGS7BP   23271
Cards
Entrez_Gene (NCBI)RGS7BP  401190  regulator of G protein signaling 7 binding protein
AliasesR7BP
GeneCards (Weizmann)RGS7BP
Ensembl hg19 (Hinxton)ENSG00000186479 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186479 [Gene_View]  chr5:64505947-64612294 [Contig_View]  RGS7BP [Vega]
ICGC DataPortalENSG00000186479
TCGA cBioPortalRGS7BP
AceView (NCBI)RGS7BP
Genatlas (Paris)RGS7BP
WikiGenes401190
SOURCE (Princeton)RGS7BP
Genetics Home Reference (NIH)RGS7BP
Genomic and cartography
GoldenPath hg38 (UCSC)RGS7BP  -     chr5:64505947-64612294 +  5q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RGS7BP  -     5q12.3   [Description]    (hg19-Feb_2009)
EnsemblRGS7BP - 5q12.3 [CytoView hg19]  RGS7BP - 5q12.3 [CytoView hg38]
Mapping of homologs : NCBIRGS7BP [Mapview hg19]  RGS7BP [Mapview hg38]
OMIM610890   
Gene and transcription
Genbank (Entrez)AK294808 AK296443 AK296494 BC140707 BX640900
RefSeq transcript (Entrez)NM_001029875 NM_001271890 NM_001271891
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RGS7BP
Cluster EST : UnigeneHs.657133 [ NCBI ]
CGAP (NCI)Hs.657133
Alternative Splicing GalleryENSG00000186479
Gene ExpressionRGS7BP [ NCBI-GEO ]   RGS7BP [ EBI - ARRAY_EXPRESS ]   RGS7BP [ SEEK ]   RGS7BP [ MEM ]
Gene Expression Viewer (FireBrowse)RGS7BP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401190
GTEX Portal (Tissue expression)RGS7BP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6MZT1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6MZT1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6MZT1
Splice isoforms : SwissVarQ6MZT1
PhosPhoSitePlusQ6MZT1
Domains : Interpro (EBI)RGS7BP/RGS9BP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RGS7BP
DMDM Disease mutations401190
Blocks (Seattle)RGS7BP
SuperfamilyQ6MZT1
Human Protein AtlasENSG00000186479
Peptide AtlasQ6MZT1
IPIIPI00047547   
Protein Interaction databases
DIP (DOE-UCLA)Q6MZT1
IntAct (EBI)Q6MZT1
FunCoupENSG00000186479
BioGRIDRGS7BP
STRING (EMBL)RGS7BP
ZODIACRGS7BP
Ontologies - Pathways
QuickGOQ6MZT1
Ontology : AmiGOnucleus  cytoplasm  plasma membrane  G-protein coupled receptor signaling pathway  negative regulation of signal transduction  
Ontology : EGO-EBInucleus  cytoplasm  plasma membrane  G-protein coupled receptor signaling pathway  negative regulation of signal transduction  
NDEx NetworkRGS7BP
Atlas of Cancer Signalling NetworkRGS7BP
Wikipedia pathwaysRGS7BP
Orthology - Evolution
OrthoDB401190
GeneTree (enSembl)ENSG00000186479
Phylogenetic Trees/Animal Genes : TreeFamRGS7BP
HOVERGENQ6MZT1
HOGENOMQ6MZT1
Homologs : HomoloGeneRGS7BP
Homology/Alignments : Family Browser (UCSC)RGS7BP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRGS7BP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RGS7BP
dbVarRGS7BP
ClinVarRGS7BP
1000_GenomesRGS7BP 
Exome Variant ServerRGS7BP
ExAC (Exome Aggregation Consortium)RGS7BP (select the gene name)
Genetic variants : HAPMAP401190
Genomic Variants (DGV)RGS7BP [DGVbeta]
DECIPHERRGS7BP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRGS7BP 
Mutations
ICGC Data PortalRGS7BP 
TCGA Data PortalRGS7BP 
Broad Tumor PortalRGS7BP
OASIS PortalRGS7BP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRGS7BP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRGS7BP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RGS7BP
DgiDB (Drug Gene Interaction Database)RGS7BP
DoCM (Curated mutations)RGS7BP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RGS7BP (select a term)
intoGenRGS7BP
Cancer3DRGS7BP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610890   
Orphanet
MedgenRGS7BP
Genetic Testing Registry RGS7BP
NextProtQ6MZT1 [Medical]
TSGene401190
GENETestsRGS7BP
Target ValidationRGS7BP
Huge Navigator RGS7BP [HugePedia]
snp3D : Map Gene to Disease401190
BioCentury BCIQRGS7BP
ClinGenRGS7BP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401190
Chemical/Pharm GKB GenePA162401279
Clinical trialRGS7BP
Miscellaneous
canSAR (ICR)RGS7BP (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRGS7BP
EVEXRGS7BP
GoPubMedRGS7BP
iHOPRGS7BP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:38:37 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.