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RGS9 (regulator of G protein signaling 9)

Identity

Alias_namesregulator of G-protein signalling 9
Alias_symbol (synonym)PERRS
RGS9L
MGC26458
MGC111763
Other alias
HGNC (Hugo) RGS9
LocusID (NCBI) 8787
Atlas_Id 72620
Location 17q24.1  [Link to chromosome band 17q24]
Location_base_pair Starts at 65137338 and ends at 65227703 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BPTF (17q24.2) / RGS9 (17q24.1)CASC3 (17q21.1) / RGS9 (17q24.1)EAF2 (3q13.33) / RGS9 (17q24.1)
EAF2 RGS9BPTF RGS9

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RGS9   10004
Cards
Entrez_Gene (NCBI)RGS9  8787  regulator of G protein signaling 9
AliasesPERRS; RGS9L
GeneCards (Weizmann)RGS9
Ensembl hg19 (Hinxton)ENSG00000108370 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000108370 [Gene_View]  chr17:65137338-65227703 [Contig_View]  RGS9 [Vega]
ICGC DataPortalENSG00000108370
TCGA cBioPortalRGS9
AceView (NCBI)RGS9
Genatlas (Paris)RGS9
WikiGenes8787
SOURCE (Princeton)RGS9
Genetics Home Reference (NIH)RGS9
Genomic and cartography
GoldenPath hg38 (UCSC)RGS9  -     chr17:65137338-65227703 +  17q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RGS9  -     17q24.1   [Description]    (hg19-Feb_2009)
EnsemblRGS9 - 17q24.1 [CytoView hg19]  RGS9 - 17q24.1 [CytoView hg38]
Mapping of homologs : NCBIRGS9 [Mapview hg19]  RGS9 [Mapview hg38]
OMIM604067   608415   
Gene and transcription
Genbank (Entrez)AF071476 AF073710 AF493932 AF493933 AK289876
RefSeq transcript (Entrez)NM_001081955 NM_001165933 NM_003835
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RGS9
Cluster EST : UnigeneHs.664380 [ NCBI ]
CGAP (NCI)Hs.664380
Alternative Splicing GalleryENSG00000108370
Gene ExpressionRGS9 [ NCBI-GEO ]   RGS9 [ EBI - ARRAY_EXPRESS ]   RGS9 [ SEEK ]   RGS9 [ MEM ]
Gene Expression Viewer (FireBrowse)RGS9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8787
GTEX Portal (Tissue expression)RGS9
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75916   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75916  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75916
Splice isoforms : SwissVarO75916
PhosPhoSitePlusO75916
Domaine pattern : Prosite (Expaxy)DEP (PS50186)    RGS (PS50132)   
Domains : Interpro (EBI)DEP_dom    G-protein_gamma-like_dom    RGS    RGS_subdom1    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)DEP (PF00610)    G-gamma (PF00631)    RGS (PF00615)   
Domain families : Pfam (NCBI)pfam00610    pfam00631    pfam00615   
Domain families : Smart (EMBL)DEP (SM00049)  GGL (SM00224)  RGS (SM00315)  
Conserved Domain (NCBI)RGS9
DMDM Disease mutations8787
Blocks (Seattle)RGS9
SuperfamilyO75916
Human Protein AtlasENSG00000108370
Peptide AtlasO75916
HPRD04962
IPIIPI00027385   IPI00216453   IPI01009816   IPI00328241   IPI00953975   IPI01013510   
Protein Interaction databases
DIP (DOE-UCLA)O75916
IntAct (EBI)O75916
FunCoupENSG00000108370
BioGRIDRGS9
STRING (EMBL)RGS9
ZODIACRGS9
Ontologies - Pathways
QuickGOO75916
Ontology : AmiGOphotoreceptor inner segment  signal transducer activity  GTPase activator activity  nucleus  cytoplasm  heterotrimeric G-protein complex  plasma membrane  protein folding  dopamine receptor signaling pathway  nervous system development  visual perception  regulation of G-protein coupled receptor protein signaling pathway  negative regulation of signal transduction  protein complex binding  intracellular signal transduction  positive regulation of GTPase activity  response to estrogen  photoreceptor disc membrane  
Ontology : EGO-EBIphotoreceptor inner segment  signal transducer activity  GTPase activator activity  nucleus  cytoplasm  heterotrimeric G-protein complex  plasma membrane  protein folding  dopamine receptor signaling pathway  nervous system development  visual perception  regulation of G-protein coupled receptor protein signaling pathway  negative regulation of signal transduction  protein complex binding  intracellular signal transduction  positive regulation of GTPase activity  response to estrogen  photoreceptor disc membrane  
Pathways : KEGGPhototransduction    Cocaine addiction   
NDEx NetworkRGS9
Atlas of Cancer Signalling NetworkRGS9
Wikipedia pathwaysRGS9
Orthology - Evolution
OrthoDB8787
GeneTree (enSembl)ENSG00000108370
Phylogenetic Trees/Animal Genes : TreeFamRGS9
HOVERGENO75916
HOGENOMO75916
Homologs : HomoloGeneRGS9
Homology/Alignments : Family Browser (UCSC)RGS9
Gene fusions - Rearrangements
Fusion: TCGAEAF2 RGS9
Fusion: TCGABPTF RGS9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRGS9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RGS9
dbVarRGS9
ClinVarRGS9
1000_GenomesRGS9 
Exome Variant ServerRGS9
ExAC (Exome Aggregation Consortium)RGS9 (select the gene name)
Genetic variants : HAPMAP8787
Genomic Variants (DGV)RGS9 [DGVbeta]
DECIPHERRGS9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRGS9 
Mutations
ICGC Data PortalRGS9 
TCGA Data PortalRGS9 
Broad Tumor PortalRGS9
OASIS PortalRGS9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRGS9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRGS9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
BioMutasearch RGS9
DgiDB (Drug Gene Interaction Database)RGS9
DoCM (Curated mutations)RGS9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RGS9 (select a term)
intoGenRGS9
Cancer3DRGS9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604067    608415   
Orphanet11074   
MedgenRGS9
Genetic Testing Registry RGS9
NextProtO75916 [Medical]
TSGene8787
GENETestsRGS9
Target ValidationRGS9
Huge Navigator RGS9 [HugePedia]
snp3D : Map Gene to Disease8787
BioCentury BCIQRGS9
ClinGenRGS9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8787
Chemical/Pharm GKB GenePA34380
Clinical trialRGS9
Miscellaneous
canSAR (ICR)RGS9 (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRGS9
EVEXRGS9
GoPubMedRGS9
iHOPRGS9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:36:09 CEST 2017

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