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RHAG (Rh-associated glycoprotein)

Identity

Alias_namesRhesus blood group-associated glycoprotein
Alias_symbol (synonym)RH50A
CD241
SLC42A1
Other aliasOHS
OHST
RH2
Rh50
Rh50GP
HGNC (Hugo) RHAG
LocusID (NCBI) 6005
Atlas_Id 72622
Location 6p12.3  [Link to chromosome band 6p12]
Location_base_pair Starts at 49605177 and ends at 49636874 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARHGEF3 (3p14.3) / RHAG (6p12.3)RHAG (6p12.3) / COMMD3 (10p12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(3;6)(p14;p12) ARHGEF3/RHAG


External links

Nomenclature
HGNC (Hugo)RHAG   10006
LRG (Locus Reference Genomic)LRG_822
Cards
Entrez_Gene (NCBI)RHAG  6005  Rh-associated glycoprotein
AliasesCD241; OHS; OHST; RH2; 
RH50A; Rh50; Rh50GP; SLC42A1
GeneCards (Weizmann)RHAG
Ensembl hg19 (Hinxton)ENSG00000112077 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000112077 [Gene_View]  ENSG00000112077 [Sequence]  chr6:49605177-49636874 [Contig_View]  RHAG [Vega]
ICGC DataPortalENSG00000112077
TCGA cBioPortalRHAG
AceView (NCBI)RHAG
Genatlas (Paris)RHAG
WikiGenes6005
SOURCE (Princeton)RHAG
Genetics Home Reference (NIH)RHAG
Genomic and cartography
GoldenPath hg38 (UCSC)RHAG  -     chr6:49605177-49636874 -  6p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RHAG  -     6p12.3   [Description]    (hg19-Feb_2009)
EnsemblRHAG - 6p12.3 [CytoView hg19]  RHAG - 6p12.3 [CytoView hg38]
Mapping of homologs : NCBIRHAG [Mapview hg19]  RHAG [Mapview hg38]
OMIM180297   185000   268150   
Gene and transcription
Genbank (Entrez)AB938314 AF031548 AF031549 AF178841 AF179682
RefSeq transcript (Entrez)NM_000324
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RHAG
Cluster EST : UnigeneHs.120950 [ NCBI ]
CGAP (NCI)Hs.120950
Alternative Splicing GalleryENSG00000112077
Gene ExpressionRHAG [ NCBI-GEO ]   RHAG [ EBI - ARRAY_EXPRESS ]   RHAG [ SEEK ]   RHAG [ MEM ]
Gene Expression Viewer (FireBrowse)RHAG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6005
GTEX Portal (Tissue expression)RHAG
Human Protein AtlasENSG00000112077-RHAG [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ02094   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ02094  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ02094
Splice isoforms : SwissVarQ02094
PhosPhoSitePlusQ02094
Domains : Interpro (EBI)Ammonium/urea_transptr    NH4_transpt_AmtB-like_dom    RhesusRHD   
Domain families : Pfam (Sanger)Ammonium_transp (PF00909)   
Domain families : Pfam (NCBI)pfam00909   
Conserved Domain (NCBI)RHAG
DMDM Disease mutations6005
Blocks (Seattle)RHAG
SuperfamilyQ02094
Human Protein Atlas [tissue]ENSG00000112077-RHAG [tissue]
Peptide AtlasQ02094
HPRD01582
IPIIPI00024094   IPI00940910   IPI01013605   IPI00844028   
Protein Interaction databases
DIP (DOE-UCLA)Q02094
IntAct (EBI)Q02094
FunCoupENSG00000112077
BioGRIDRHAG
STRING (EMBL)RHAG
ZODIACRHAG
Ontologies - Pathways
QuickGOQ02094
Ontology : AmiGO###############################################################################################################################################################################################################################################################                                          
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################                                          
NDEx NetworkRHAG
Atlas of Cancer Signalling NetworkRHAG
Wikipedia pathwaysRHAG
Orthology - Evolution
OrthoDB6005
GeneTree (enSembl)ENSG00000112077
Phylogenetic Trees/Animal Genes : TreeFamRHAG
HOVERGENQ02094
HOGENOMQ02094
Homologs : HomoloGeneRHAG
Homology/Alignments : Family Browser (UCSC)RHAG
Gene fusions - Rearrangements
Fusion : QuiverRHAG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRHAG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RHAG
dbVarRHAG
ClinVarRHAG
1000_GenomesRHAG 
Exome Variant ServerRHAG
ExAC (Exome Aggregation Consortium)ENSG00000112077
GNOMAD BrowserENSG00000112077
Varsome BrowserRHAG
Genetic variants : HAPMAP6005
Genomic Variants (DGV)RHAG [DGVbeta]
DECIPHERRHAG [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRHAG 
Mutations
ICGC Data PortalRHAG 
TCGA Data PortalRHAG 
Broad Tumor PortalRHAG
OASIS PortalRHAG [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRHAG  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRHAG
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RHAG
DgiDB (Drug Gene Interaction Database)RHAG
DoCM (Curated mutations)RHAG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RHAG (select a term)
intoGenRHAG
Cancer3DRHAG(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM180297    185000    268150   
Orphanet3656    10997   
DisGeNETRHAG
MedgenRHAG
Genetic Testing Registry RHAG
NextProtQ02094 [Medical]
TSGene6005
GENETestsRHAG
Target ValidationRHAG
Huge Navigator RHAG [HugePedia]
snp3D : Map Gene to Disease6005
BioCentury BCIQRHAG
ClinGenRHAG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6005
Chemical/Pharm GKB GenePA34381
Clinical trialRHAG
Miscellaneous
canSAR (ICR)RHAG (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRHAG
EVEXRHAG
GoPubMedRHAG
iHOPRHAG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:26:28 CEST 2018

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