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RHBG (Rh family B glycoprotein (gene/pseudogene))

Identity

Alias_namesRhesus blood group, B glycoprotein
Alias_symbol (synonym)SLC42A2
Other alias
HGNC (Hugo) RHBG
LocusID (NCBI) 57127
Atlas_Id 72627
Location 1q22  [Link to chromosome band 1q22]
Location_base_pair Starts at 156369189 and ends at 156385221 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LGALS8 (1q43) / RHBG (1q22)PBX1 (1q23.3) / RHBG (1q22)LGALS8 RHBG
PBX1 RHBG

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RHBG   14572
Cards
Entrez_Gene (NCBI)RHBG  57127  Rh family B glycoprotein (gene/pseudogene)
AliasesSLC42A2
GeneCards (Weizmann)RHBG
Ensembl hg19 (Hinxton)ENSG00000132677 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132677 [Gene_View]  chr1:156369189-156385221 [Contig_View]  RHBG [Vega]
ICGC DataPortalENSG00000132677
TCGA cBioPortalRHBG
AceView (NCBI)RHBG
Genatlas (Paris)RHBG
WikiGenes57127
SOURCE (Princeton)RHBG
Genetics Home Reference (NIH)RHBG
Genomic and cartography
GoldenPath hg38 (UCSC)RHBG  -     chr1:156369189-156385221 +  1q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RHBG  -     1q22   [Description]    (hg19-Feb_2009)
EnsemblRHBG - 1q22 [CytoView hg19]  RHBG - 1q22 [CytoView hg38]
Mapping of homologs : NCBIRHBG [Mapview hg19]  RHBG [Mapview hg38]
OMIM607079   
Gene and transcription
Genbank (Entrez)AF193807 AI310325 AK054780 AK290840 AK294641
RefSeq transcript (Entrez)NM_001256395 NM_001256396 NM_020407
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RHBG
Cluster EST : UnigeneHs.131835 [ NCBI ]
CGAP (NCI)Hs.131835
Alternative Splicing GalleryENSG00000132677
Gene ExpressionRHBG [ NCBI-GEO ]   RHBG [ EBI - ARRAY_EXPRESS ]   RHBG [ SEEK ]   RHBG [ MEM ]
Gene Expression Viewer (FireBrowse)RHBG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57127
GTEX Portal (Tissue expression)RHBG
Human Protein AtlasENSG00000132677-RHBG [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H310   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H310  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H310
Splice isoforms : SwissVarQ9H310
PhosPhoSitePlusQ9H310
Domains : Interpro (EBI)Ammonium/urea_transptr    NH4_transpt_AmtB-like_dom    RhesusRHD   
Domain families : Pfam (Sanger)Ammonium_transp (PF00909)   
Domain families : Pfam (NCBI)pfam00909   
Conserved Domain (NCBI)RHBG
DMDM Disease mutations57127
Blocks (Seattle)RHBG
SuperfamilyQ9H310
Human Protein Atlas [tissue]ENSG00000132677-RHBG [tissue]
Peptide AtlasQ9H310
HPRD06152
IPIIPI01012709   IPI00439781   IPI00925309   IPI00929353   IPI00922439   IPI00922813   IPI00006978   IPI00640961   IPI00925934   IPI01011039   
Protein Interaction databases
DIP (DOE-UCLA)Q9H310
IntAct (EBI)Q9H310
FunCoupENSG00000132677
BioGRIDRHBG
STRING (EMBL)RHBG
ZODIACRHBG
Ontologies - Pathways
QuickGOQ9H310
Ontology : AmiGOplasma membrane  plasma membrane  integral component of plasma membrane  ammonium transmembrane transporter activity  ammonium transmembrane transporter activity  ammonium transmembrane transporter activity  spectrin-associated cytoskeleton  organic cation transport  ammonium transport  ammonium transport  basolateral plasma membrane  basolateral plasma membrane  ankyrin binding  cytoplasmic vesicle membrane  anchored component of plasma membrane  transepithelial ammonium transport  ammonium transmembrane transport  
Ontology : EGO-EBIplasma membrane  plasma membrane  integral component of plasma membrane  ammonium transmembrane transporter activity  ammonium transmembrane transporter activity  ammonium transmembrane transporter activity  spectrin-associated cytoskeleton  organic cation transport  ammonium transport  ammonium transpor|"nBsp; basolateral plasma membrane  basolateral plasma membrane  ankyrin binding  cytoplasmic vesicle membrane  anchored component of plasma membrane  transepithelial ammonium transport  ammonium transmembrane transport  
NDEx NetworkRHBG
Atlas of Cancer Signalling NetworkRHBG
Wikipedia pathwaysRHBG
Orthology - Evolution
OrthoDB57127
GeneTree (enSembl)ENSG00000132677
Phylogenetic Trees/Animal Genes : TreeFamRHBG
HOVERGENQ9H310
HOGENOMQ9H310
Homologs : HomoloGeneRHBG
Homology/Alignments : Family Browser (UCSC)RHBG
Gene fusions - Rearrangements
Fusion: TCGALGALS8 RHBG
Fusion: TCGAPBX1 RHBG
Fusion: Tumor Portal RHBG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRHBG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RHBG
dbVarRHBG
ClinVarRHBG
1000_GenomesRHBG 
Exome Variant ServerRHBG
ExAC (Exome Aggregation Consortium)ENSG00000132677
GNOMAD BrowserENSG00000132677
Genetic variants : HAPMAP57127
Genomic Variants (DGV)RHBG [DGVbeta]
DECIPHERRHBG [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRHBG 
Mutations
ICGC Data PortalRHBG 
TCGA Data PortalRHBG 
Broad Tumor PortalRHBG
OASIS PortalRHBG [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRHBG
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RHBG
DgiDB (Drug Gene Interaction Database)RHBG
DoCM (Curated mutations)RHBG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RHBG (select a term)
intoGenRHBG
Cancer3DRHBG(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607079   
Orphanet
MedgenRHBG
Genetic Testing Registry RHBG
NextProtQ9H310 [Medical]
TSGene57127
GENETestsRHBG
Target ValidationRHBG
Huge Navigator RHBG [HugePedia]
snp3D : Map Gene to Disease57127
BioCentury BCIQRHBG
ClinGenRHBG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57127
Chemical/Pharm GKB GenePA34385
Clinical trialRHBG
Miscellaneous
canSAR (ICR)RHBG (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRHBG
EVEXRHBG
GoPubMedRHBG
iHOPRHBG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:24:51 CET 2017

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