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RHCG (Rh family, C glycoprotein)

Identity

Alias_namesC15orf6
chromosome 15 open reading frame 6
Rhesus blood group, C glycoprotein
Alias_symbol (synonym)RHGK
PDRC2
SLC42A3
Other alias
HGNC (Hugo) RHCG
LocusID (NCBI) 51458
Atlas_Id 72629
Location 15q26.1  [Link to chromosome band 15q26]
Location_base_pair Starts at 90014640 and ends at 90039844 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RHCG (15q26.1) / ITGA6 (2q31.1)RHCG (15q26.1) / TULP4 (6q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RHCG   18140
Cards
Entrez_Gene (NCBI)RHCG  51458  Rh family, C glycoprotein
AliasesC15orf6; PDRC2; RHGK; SLC42A3
GeneCards (Weizmann)RHCG
Ensembl hg19 (Hinxton)ENSG00000140519 [Gene_View]  chr15:90014640-90039844 [Contig_View]  RHCG [Vega]
Ensembl hg38 (Hinxton)ENSG00000140519 [Gene_View]  chr15:90014640-90039844 [Contig_View]  RHCG [Vega]
ICGC DataPortalENSG00000140519
TCGA cBioPortalRHCG
AceView (NCBI)RHCG
Genatlas (Paris)RHCG
WikiGenes51458
SOURCE (Princeton)RHCG
Genetics Home Reference (NIH)RHCG
Genomic and cartography
GoldenPath hg19 (UCSC)RHCG  -     chr15:90014640-90039844 -  15q26.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RHCG  -     15q26.1   [Description]    (hg38-Dec_2013)
EnsemblRHCG - 15q26.1 [CytoView hg19]  RHCG - 15q26.1 [CytoView hg38]
Mapping of homologs : NCBIRHCG [Mapview hg19]  RHCG [Mapview hg38]
OMIM605381   
Gene and transcription
Genbank (Entrez)AF081497 AF193809 AK290899 AK298252 AK298641
RefSeq transcript (Entrez)NM_016321
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929399
Consensus coding sequences : CCDS (NCBI)RHCG
Cluster EST : UnigeneHs.459284 [ NCBI ]
CGAP (NCI)Hs.459284
Alternative Splicing GalleryENSG00000140519
Gene ExpressionRHCG [ NCBI-GEO ]   RHCG [ EBI - ARRAY_EXPRESS ]   RHCG [ SEEK ]   RHCG [ MEM ]
Gene Expression Viewer (FireBrowse)RHCG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51458
GTEX Portal (Tissue expression)RHCG
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBD6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UBD6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UBD6
Splice isoforms : SwissVarQ9UBD6
PhosPhoSitePlusQ9UBD6
Domains : Interpro (EBI)Ammonium/urea_transptr    NH4_transpt_AmtB-like_dom    RhesusRHD   
Domain families : Pfam (Sanger)Ammonium_transp (PF00909)   
Domain families : Pfam (NCBI)pfam00909   
Conserved Domain (NCBI)RHCG
DMDM Disease mutations51458
Blocks (Seattle)RHCG
PDB (SRS)3HD6   
PDB (PDBSum)3HD6   
PDB (IMB)3HD6   
PDB (RSDB)3HD6   
Structural Biology KnowledgeBase3HD6   
SCOP (Structural Classification of Proteins)3HD6   
CATH (Classification of proteins structures)3HD6   
SuperfamilyQ9UBD6
Human Protein AtlasENSG00000140519
Peptide AtlasQ9UBD6
HPRD16102
IPIIPI00008820   IPI00798275   IPI01012729   IPI00790213   
Protein Interaction databases
DIP (DOE-UCLA)Q9UBD6
IntAct (EBI)Q9UBD6
FunCoupENSG00000140519
BioGRIDRHCG
STRING (EMBL)RHCG
ZODIACRHCG
Ontologies - Pathways
QuickGOQ9UBD6
Ontology : AmiGOplasma membrane  plasma membrane  integral component of plasma membrane  cellular ion homeostasis  regulation of pH  ammonium transmembrane transporter activity  ammonium transmembrane transporter activity  ammonium transport  ammonium transport  amine transport  basolateral plasma membrane  apical plasma membrane  ankyrin binding  epithelial cell differentiation  cytoplasmic vesicle  homeostatic process  transmembrane transport  extracellular exosome  transepithelial ammonium transport  ammonium transmembrane transport  ammonium transmembrane transport  ammonium transmembrane transport  
Ontology : EGO-EBIplasma membrane  plasma membrane  integral component of plasma membrane  cellular ion homeostasis  regulation of pH  ammonium transmembrane transporter activity  ammonium transmembrane transporter activity  ammonium transport  ammonium transport  amine transport  basolateral plasma membrane  apical plasma membrane  ankyrin binding  epithelial cell differentiation  cytoplasmic vesicle  homeostatic process  transmembrane transport  extracellular exosome  transepithelial ammonium transport  ammonium transmembrane transport  ammonium transmembrane transport  ammonium transmembrane transport  
NDEx NetworkRHCG
Atlas of Cancer Signalling NetworkRHCG
Wikipedia pathwaysRHCG
Orthology - Evolution
OrthoDB51458
GeneTree (enSembl)ENSG00000140519
Phylogenetic Trees/Animal Genes : TreeFamRHCG
HOVERGENQ9UBD6
HOGENOMQ9UBD6
Homologs : HomoloGeneRHCG
Homology/Alignments : Family Browser (UCSC)RHCG
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRHCG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RHCG
dbVarRHCG
ClinVarRHCG
1000_GenomesRHCG 
Exome Variant ServerRHCG
ExAC (Exome Aggregation Consortium)RHCG (select the gene name)
Genetic variants : HAPMAP51458
Genomic Variants (DGV)RHCG [DGVbeta]
DECIPHER (Syndromes)15:90014640-90039844  ENSG00000140519
CONAN: Copy Number AnalysisRHCG 
Mutations
ICGC Data PortalRHCG 
TCGA Data PortalRHCG 
Broad Tumor PortalRHCG
OASIS PortalRHCG [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRHCG  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRHCG
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RHCG
DgiDB (Drug Gene Interaction Database)RHCG
DoCM (Curated mutations)RHCG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RHCG (select a term)
intoGenRHCG
Cancer3DRHCG(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605381   
Orphanet
MedgenRHCG
Genetic Testing Registry RHCG
NextProtQ9UBD6 [Medical]
TSGene51458
GENETestsRHCG
Huge Navigator RHCG [HugePedia]
snp3D : Map Gene to Disease51458
BioCentury BCIQRHCG
ClinGenRHCG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51458
Chemical/Pharm GKB GenePA134876043
Clinical trialRHCG
Miscellaneous
canSAR (ICR)RHCG (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRHCG
EVEXRHCG
GoPubMedRHCG
iHOPRHCG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:41:03 CET 2017

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