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RHNO1 (RAD9-HUS1-RAD1 interacting nuclear orphan 1)

Identity

Alias_namesRad1
Hus1 interacting nuclear orphan
Alias_symbol (synonym)HKMT1188
MGC13204
RHINO
Other aliasC12orf32
HGNC (Hugo) RHNO1
LocusID (NCBI) 83695
Atlas_Id 52867
Location 12p13.33  [Link to chromosome band 12p13]
Location_base_pair Starts at 2877199 and ends at 2889525 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RHNO1   28206
Cards
Entrez_Gene (NCBI)RHNO1  83695  RAD9-HUS1-RAD1 interacting nuclear orphan 1
AliasesC12orf32; HKMT1188; RHINO
GeneCards (Weizmann)RHNO1
Ensembl hg19 (Hinxton)ENSG00000171792 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171792 [Gene_View]  chr12:2877199-2889525 [Contig_View]  RHNO1 [Vega]
ICGC DataPortalENSG00000171792
TCGA cBioPortalRHNO1
AceView (NCBI)RHNO1
Genatlas (Paris)RHNO1
WikiGenes83695
SOURCE (Princeton)RHNO1
Genetics Home Reference (NIH)RHNO1
Genomic and cartography
GoldenPath hg38 (UCSC)RHNO1  -     chr12:2877199-2889525 +  12p13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RHNO1  -     12p13.33   [Description]    (hg19-Feb_2009)
EnsemblRHNO1 - 12p13.33 [CytoView hg19]  RHNO1 - 12p13.33 [CytoView hg38]
Mapping of homologs : NCBIRHNO1 [Mapview hg19]  RHNO1 [Mapview hg38]
OMIM614085   
Gene and transcription
Genbank (Entrez)AB073599 AI631627 AK021945 AK304613 AK315364
RefSeq transcript (Entrez)NM_001252499 NM_001252500 NM_001257097 NM_001257098
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RHNO1
Cluster EST : UnigeneHs.198853 [ NCBI ]
CGAP (NCI)Hs.198853
Alternative Splicing GalleryENSG00000171792
Gene ExpressionRHNO1 [ NCBI-GEO ]   RHNO1 [ EBI - ARRAY_EXPRESS ]   RHNO1 [ SEEK ]   RHNO1 [ MEM ]
Gene Expression Viewer (FireBrowse)RHNO1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83695
GTEX Portal (Tissue expression)RHNO1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BSD3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BSD3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BSD3
Splice isoforms : SwissVarQ9BSD3
PhosPhoSitePlusQ9BSD3
Domains : Interpro (EBI)RHNO1   
Domain families : Pfam (Sanger)RHINO (PF15319)   
Domain families : Pfam (NCBI)pfam15319   
Conserved Domain (NCBI)RHNO1
DMDM Disease mutations83695
Blocks (Seattle)RHNO1
SuperfamilyQ9BSD3
Human Protein AtlasENSG00000171792
Peptide AtlasQ9BSD3
HPRD17487
IPIIPI00027812   IPI01013737   IPI00793701   IPI01009752   IPI01009268   IPI01015751   
Protein Interaction databases
DIP (DOE-UCLA)Q9BSD3
IntAct (EBI)Q9BSD3
FunCoupENSG00000171792
BioGRIDRHNO1
STRING (EMBL)RHNO1
ZODIACRHNO1
Ontologies - Pathways
QuickGOQ9BSD3
Ontology : AmiGODNA damage checkpoint  recombinational repair  protein binding  nucleus  nucleoplasm  chromosome  DNA replication  cell cycle  cellular response to UV  positive regulation of G0 to G1 transition  cellular response to ionizing radiation  regulation of signal transduction by p53 class mediator  
Ontology : EGO-EBIDNA damage checkpoint  recombinational repair  protein binding  nucleus  nucleoplasm  chromosome  DNA replication  cell cycle  cellular response to UV  positive regulation of G0 to G1 transition  cellular response to ionizing radiation  regulation of signal transduction by p53 class mediator  
NDEx NetworkRHNO1
Atlas of Cancer Signalling NetworkRHNO1
Wikipedia pathwaysRHNO1
Orthology - Evolution
OrthoDB83695
GeneTree (enSembl)ENSG00000171792
Phylogenetic Trees/Animal Genes : TreeFamRHNO1
HOVERGENQ9BSD3
HOGENOMQ9BSD3
Homologs : HomoloGeneRHNO1
Homology/Alignments : Family Browser (UCSC)RHNO1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRHNO1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RHNO1
dbVarRHNO1
ClinVarRHNO1
1000_GenomesRHNO1 
Exome Variant ServerRHNO1
ExAC (Exome Aggregation Consortium)RHNO1 (select the gene name)
Genetic variants : HAPMAP83695
Genomic Variants (DGV)RHNO1 [DGVbeta]
DECIPHERRHNO1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRHNO1 
Mutations
ICGC Data PortalRHNO1 
TCGA Data PortalRHNO1 
Broad Tumor PortalRHNO1
OASIS PortalRHNO1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRHNO1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RHNO1
DgiDB (Drug Gene Interaction Database)RHNO1
DoCM (Curated mutations)RHNO1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RHNO1 (select a term)
intoGenRHNO1
Cancer3DRHNO1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614085   
Orphanet
MedgenRHNO1
Genetic Testing Registry RHNO1
NextProtQ9BSD3 [Medical]
TSGene83695
GENETestsRHNO1
Huge Navigator RHNO1 [HugePedia]
snp3D : Map Gene to Disease83695
BioCentury BCIQRHNO1
ClinGenRHNO1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83695
Chemical/Pharm GKB GenePA143485362
Clinical trialRHNO1
Miscellaneous
canSAR (ICR)RHNO1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRHNO1
EVEXRHNO1
GoPubMedRHNO1
iHOPRHNO1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:34:57 CEST 2017

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