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RHOBTB3 (Rho-related BTB domain containing 3)

Identity

Other names-
HGNC (Hugo) RHOBTB3
LocusID (NCBI) 22836
Location 5q15
Location_base_pair Starts at 95066850 and ends at 95132071 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RHOBTB3   18757
Entrez_Gene (NCBI)RHOBTB3  22836  Rho-related BTB domain containing 3
Cards
GeneCards (Weizmann)RHOBTB3
Ensembl (Hinxton)ENSG00000164292 [Gene_View]  chr5:95066850-95132071 [Contig_View]  RHOBTB3 [Vega]
AceView (NCBI)RHOBTB3
Genatlas (Paris)RHOBTB3
SOURCE (Stanford)NM_014899
Genomic and cartography
GoldenPath (UCSC)RHOBTB3  -  5q15   chr5:95066850-95132071 +  5q15   [Description]    (hg19-Feb_2009)
EnsemblRHOBTB3 - 5q15 [CytoView]
Mapping of homologs : NCBIRHOBTB3 [Mapview]
OMIM607353   
Gene and transcription
Genbank (Entrez)AB020685 AF131794 AK023621 AK290034 BC013169
RefSeq transcript (SRS)NM_014899
RefSeq transcript (Entrez)NM_014899
RefSeq genomic (SRS)AC_000137 NC_000005 NC_018916 NT_034772 NW_001838952 NW_004078024
RefSeq genomic (Entrez)AC_000137 NC_000005 NC_018916 NT_034772 NW_001838952 NW_004078024
Consensus coding sequences : CCDS (NCBI)RHOBTB3
Cluster EST : UnigeneHs.445030 [ SRS ] Hs.445030 [ NCBI ]
CGAP (NCI)Hs.445030
Alternative Splicing : Fast-db (Paris)GSHG0024111
Alternative Splicing GalleryENSG00000164292
Gene ExpressionRHOBTB3 [ NCBI-GEO ]   RHOBTB3 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO94955 (SRS) O94955 (Uniprot)
NextProtO94955
With graphics : InterProO94955
Splice isoforms : SwissVarO94955(Swissvar)
Domaine pattern : Prosite (SRS)BTB (PS50097)   
Domaine pattern : Prosite (Expaxy)BTB (PS50097)   
Domains : Interpro (SRS)BTB/POZ-like    BTB/POZ_fold    BTB_POZ    Small_GTPase   
Domains : Interpro (EBI)BTB/POZ-like    BTB/POZ_fold    BTB_POZ    Small_GTPase   
Related proteins : CluSTrO94955
Domain families : Pfam (SRS)BTB (PF00651)    Ras (PF00071)   
Domain families : Pfam (Sanger)BTB (PF00651)    Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00651    pfam00071   
Domain families : Smart (EMBL)BTB (SM00225)  
DMDM22836
Blocks (Seattle)O94955
Human Protein AtlasENSG00000164292
HPRD09557
IPIIPI00007132   IPI00965631   IPI00967840   IPI00966320   IPI00968250   IPI00968037   IPI00967509   IPI00968093   IPI00966524   IPI00964245   IPI00966315   
Protein Interaction databases
DIP (DOE-UCLA)O94955
IntAct (EBI)O94955
FunCoupENSG00000164292
REACTOMERHOBTB3
Protein Interaction Database22836
BioGRIDRHOBTB3
InParanoidO94955
Interologous Interaction database O94955
IntegromeDBRHOBTB3
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)RHOBTB3
SNP (GeneSNP Utah)RHOBTB3
SNP : HGBaseRHOBTB3
Genetic variants : HAPMAPRHOBTB3
Somatic Mutations in Cancer : COSMICRHOBTB3 
CONAN: Copy Number AnalysisRHOBTB3 
Mutations and Diseases : HGMDRHOBTB3
OMIM607353   
GENETests607353   
Disease Genetic AssociationRHOBTB3
Huge Navigator RHOBTB3 [HugePedia]  RHOBTB3 [HugeCancerGEM]
Genomic VariantsRHOBTB3  RHOBTB3 [DGVbeta]
ClinVarRHOBTB3
snp3D : Map Gene to Disease22836
General knowledge
Homologs : HomoloGeneRHOBTB3
Homology/Alignments : Family Browser (UCSC)RHOBTB3
Phylogenetic Trees/Animal Genes : TreeFamRHOBTB3
Chemical/Protein Interactions : CTD22836
Chemical/Pharm GKB GenePA38679
Clinical trialRHOBTB3
Cancer Resource (Charite)ENSG00000164292
Ontology : AmiGOprotein binding  ATP binding  GTP binding  Golgi apparatus  ATP catabolic process  small GTPase mediated signal transduction  ATPase activity  Rab GTPase binding  retrograde transport, endosome to Golgi  
Ontology : EGO-EBIprotein binding  ATP binding  GTP binding  Golgi apparatus  ATP catabolic process  small GTPase mediated signal transduction  ATPase activity  Rab GTPase binding  retrograde transport, endosome to Golgi  
Other databases
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
PubGeneRHOBTB3
iHOPRHOBTB3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:39:53 CEST 2013
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