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RHOD (ras homolog family member D)

Identity

Alias (NCBI)ARHD
RHOHP1
RHOM
Rho
HGNC (Hugo) RHOD
HGNC Alias symbRhoHP1
Rho
HGNC Alias nameRho-related protein HP1
 Rho-related GTP-binding protein RhoD
HGNC Previous nameARHD
HGNC Previous nameras homolog gene family, member D
LocusID (NCBI) 29984
Atlas_Id 50349
Location 11q13.2  [Link to chromosome band 11q13]
Location_base_pair Starts at 67056847 and ends at 67072017 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ANKRD42 (11q14.1) / RHOD (11q13.2)BANP (16q24.2) / RHOD (11q13.2)KDM2A (11q13.2) / RHOD (11q13.2)
RHOD (11q13.2) / C11orf86 (11q13.2)RHOD (11q13.2) / RPLP0 (12q24.23)ANKRD42 11q14.1 / RHOD 11q13.2
KDM2A 11q13.2 / RHOD 11q13.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RHOD   670
Cards
Entrez_Gene (NCBI)RHOD    ras homolog family member D
AliasesARHD; RHOHP1; RHOM; Rho
GeneCards (Weizmann)RHOD
Ensembl hg19 (Hinxton)ENSG00000173156 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173156 [Gene_View]  ENSG00000173156 [Sequence]  chr11:67056847-67072017 [Contig_View]  RHOD [Vega]
ICGC DataPortalENSG00000173156
TCGA cBioPortalRHOD
AceView (NCBI)RHOD
Genatlas (Paris)RHOD
SOURCE (Princeton)RHOD
Genetics Home Reference (NIH)RHOD
Genomic and cartography
GoldenPath hg38 (UCSC)RHOD  -     chr11:67056847-67072017 +  11q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RHOD  -     11q13.2   [Description]    (hg19-Feb_2009)
GoldenPathRHOD - 11q13.2 [CytoView hg19]  RHOD - 11q13.2 [CytoView hg38]
ImmunoBaseENSG00000173156
Genome Data Viewer NCBIRHOD [Mapview hg19]  
OMIM605781   
Gene and transcription
Genbank (Entrez)AF498973 BC001338 BM761353 BM761362 CA433897
RefSeq transcript (Entrez)NM_001300886 NM_014578
Consensus coding sequences : CCDS (NCBI)RHOD
Gene ExpressionRHOD [ NCBI-GEO ]   RHOD [ EBI - ARRAY_EXPRESS ]   RHOD [ SEEK ]   RHOD [ MEM ]
Gene Expression Viewer (FireBrowse)RHOD [ Firebrowse - Broad ]
GenevisibleExpression of RHOD in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29984
GTEX Portal (Tissue expression)RHOD
Human Protein AtlasENSG00000173156-RHOD [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00212   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO00212  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO00212
PhosPhoSitePlusO00212
Domaine pattern : Prosite (Expaxy)RHO (PS51420)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase    Small_GTPase_Rho   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Conserved Domain (NCBI)RHOD
PDB (RSDB)2J1L   
PDB Europe2J1L   
PDB (PDBSum)2J1L   
PDB (IMB)2J1L   
Structural Biology KnowledgeBase2J1L   
SCOP (Structural Classification of Proteins)2J1L   
CATH (Classification of proteins structures)2J1L   
SuperfamilyO00212
AlphaFold pdb e-kbO00212   
Human Protein Atlas [tissue]ENSG00000173156-RHOD [tissue]
HPRD05776
Protein Interaction databases
DIP (DOE-UCLA)O00212
IntAct (EBI)O00212
BioGRIDRHOD
STRING (EMBL)RHOD
ZODIACRHOD
Ontologies - Pathways
QuickGOO00212
Ontology : AmiGOGTPase activity  GTP binding  early endosome  cytosol  cytoskeleton  plasma membrane  plasma membrane  cell cortex  actin filament organization  establishment or maintenance of cell polarity  Rho protein signal transduction  regulation of cell shape  endosome membrane  cell migration  protein kinase binding  lamellipodium assembly  positive regulation of cell migration  cortical cytoskeleton organization  cytoplasmic vesicle  regulation of actin cytoskeleton organization  cell projection  intracellular membrane-bounded organelle  positive regulation of cell adhesion  focal adhesion assembly  actin filament bundle assembly  regulation of small GTPase mediated signal transduction  
Ontology : EGO-EBIGTPase activity  GTP binding  early endosome  cytosol  cytoskeleton  plasma membrane  plasma membrane  cell cortex  actin filament organization  establishment or maintenance of cell polarity  Rho protein signal transduction  regulation of cell shape  endosome membrane  cell migration  protein kinase binding  lamellipodium assembly  positive regulation of cell migration  cortical cytoskeleton organization  cytoplasmic vesicle  regulation of actin cytoskeleton organization  cell projection  intracellular membrane-bounded organelle  positive regulation of cell adhesion  focal adhesion assembly  actin filament bundle assembly  regulation of small GTPase mediated signal transduction  
Pathways : KEGGAxon guidance   
NDEx NetworkRHOD
Atlas of Cancer Signalling NetworkRHOD
Wikipedia pathwaysRHOD
Orthology - Evolution
OrthoDB29984
GeneTree (enSembl)ENSG00000173156
Phylogenetic Trees/Animal Genes : TreeFamRHOD
Homologs : HomoloGeneRHOD
Homology/Alignments : Family Browser (UCSC)RHOD
Gene fusions - Rearrangements
Fusion : MitelmanANKRD42/RHOD [11q14.1/11q13.2]  
Fusion : MitelmanKDM2A/RHOD [11q13.2/11q13.2]  
Fusion : QuiverRHOD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRHOD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RHOD
dbVarRHOD
ClinVarRHOD
MonarchRHOD
1000_GenomesRHOD 
Exome Variant ServerRHOD
GNOMAD BrowserENSG00000173156
Varsome BrowserRHOD
ACMGRHOD variants
VarityO00212
Genomic Variants (DGV)RHOD [DGVbeta]
DECIPHERRHOD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRHOD 
Mutations
ICGC Data PortalRHOD 
TCGA Data PortalRHOD 
Broad Tumor PortalRHOD
OASIS PortalRHOD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRHOD  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRHOD
Mutations and Diseases : HGMDRHOD
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRHOD
DgiDB (Drug Gene Interaction Database)RHOD
DoCM (Curated mutations)RHOD
CIViC (Clinical Interpretations of Variants in Cancer)RHOD
Cancer3DRHOD
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605781   
Orphanet
DisGeNETRHOD
MedgenRHOD
Genetic Testing Registry RHOD
NextProtO00212 [Medical]
GENETestsRHOD
Target ValidationRHOD
Huge Navigator RHOD [HugePedia]
ClinGenRHOD
Clinical trials, drugs, therapy
MyCancerGenomeRHOD
Protein Interactions : CTDRHOD
Pharm GKB GenePA24952
PharosO00212
Clinical trialRHOD
Miscellaneous
canSAR (ICR)RHOD
HarmonizomeRHOD
DataMed IndexRHOD
Probes
Litterature
PubMed53 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRHOD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:28:55 CEST 2021

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