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RHOD (ras homolog family member D)

Identity

Alias_namesARHD
ras homolog gene family
Alias_symbol (synonym)RhoHP1
RhoD
Rho
Other aliasRHOHP1
RHOM
HGNC (Hugo) RHOD
LocusID (NCBI) 29984
Atlas_Id 50349
Location 11q13.2  [Link to chromosome band 11q13]
Location_base_pair Starts at 67056818 and ends at 67072017 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ANKRD42 (11q14.1) / RHOD (11q13.2)BANP (16q24.2) / RHOD (11q13.2)KDM2A (11q13.2) / RHOD (11q13.2)
RHOD (11q13.2) / C11orf86 (11q13.2)RHOD (11q13.2) / RPLP0 (12q24.23)ANKRD42 11q14.1 / RHOD 11q13.2
KDM2A 11q13.2 / RHOD 11q13.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RHOD   670
Cards
Entrez_Gene (NCBI)RHOD  29984  ras homolog family member D
AliasesARHD; RHOHP1; RHOM; Rho
GeneCards (Weizmann)RHOD
Ensembl hg19 (Hinxton)ENSG00000173156 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173156 [Gene_View]  chr11:67056818-67072017 [Contig_View]  RHOD [Vega]
ICGC DataPortalENSG00000173156
TCGA cBioPortalRHOD
AceView (NCBI)RHOD
Genatlas (Paris)RHOD
WikiGenes29984
SOURCE (Princeton)RHOD
Genetics Home Reference (NIH)RHOD
Genomic and cartography
GoldenPath hg38 (UCSC)RHOD  -     chr11:67056818-67072017 +  11q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RHOD  -     11q13.2   [Description]    (hg19-Feb_2009)
EnsemblRHOD - 11q13.2 [CytoView hg19]  RHOD - 11q13.2 [CytoView hg38]
Mapping of homologs : NCBIRHOD [Mapview hg19]  RHOD [Mapview hg38]
OMIM605781   
Gene and transcription
Genbank (Entrez)AF498973 BC001338 BM761353 BM761362 CA433897
RefSeq transcript (Entrez)NM_001300886 NM_014578
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RHOD
Cluster EST : UnigeneHs.15114 [ NCBI ]
CGAP (NCI)Hs.15114
Alternative Splicing GalleryENSG00000173156
Gene ExpressionRHOD [ NCBI-GEO ]   RHOD [ EBI - ARRAY_EXPRESS ]   RHOD [ SEEK ]   RHOD [ MEM ]
Gene Expression Viewer (FireBrowse)RHOD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29984
GTEX Portal (Tissue expression)RHOD
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00212   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO00212  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO00212
Splice isoforms : SwissVarO00212
PhosPhoSitePlusO00212
Domaine pattern : Prosite (Expaxy)RHO (PS51420)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Conserved Domain (NCBI)RHOD
DMDM Disease mutations29984
Blocks (Seattle)RHOD
PDB (SRS)2J1L   
PDB (PDBSum)2J1L   
PDB (IMB)2J1L   
PDB (RSDB)2J1L   
Structural Biology KnowledgeBase2J1L   
SCOP (Structural Classification of Proteins)2J1L   
CATH (Classification of proteins structures)2J1L   
SuperfamilyO00212
Human Protein AtlasENSG00000173156
Peptide AtlasO00212
HPRD05776
IPIIPI00010841   IPI00975908   IPI00976674   
Protein Interaction databases
DIP (DOE-UCLA)O00212
IntAct (EBI)O00212
FunCoupENSG00000173156
BioGRIDRHOD
STRING (EMBL)RHOD
ZODIACRHOD
Ontologies - Pathways
QuickGOO00212
Ontology : AmiGOGTPase activity  GTP binding  early endosome  cytosol  plasma membrane  protein targeting  Rho protein signal transduction  endosome membrane  protein kinase binding  lamellipodium assembly  positive regulation of cell migration  positive regulation of cell adhesion  focal adhesion assembly  actin filament bundle assembly  regulation of small GTPase mediated signal transduction  regulation of focal adhesion assembly  regulation of actin cytoskeleton reorganization  
Ontology : EGO-EBIGTPase activity  GTP binding  early endosome  cytosol  plasma membrane  protein targeting  Rho protein signal transduction  endosome membrane  protein kinase binding  lamellipodium assembly  positive regulation of cell migration  positive regulation of cell adhesion  focal adhesion assembly  actin filament bundle assembly  regulation of small GTPase mediated signal transduction  regulation of focal adhesion assembly  regulation of actin cytoskeleton reorganization  
Pathways : KEGGAxon guidance   
NDEx NetworkRHOD
Atlas of Cancer Signalling NetworkRHOD
Wikipedia pathwaysRHOD
Orthology - Evolution
OrthoDB29984
GeneTree (enSembl)ENSG00000173156
Phylogenetic Trees/Animal Genes : TreeFamRHOD
HOVERGENO00212
HOGENOMO00212
Homologs : HomoloGeneRHOD
Homology/Alignments : Family Browser (UCSC)RHOD
Gene fusions - Rearrangements
Fusion : MitelmanANKRD42/RHOD [11q14.1/11q13.2]  [t(11;11)(q13;q14)]  
Fusion : MitelmanKDM2A/RHOD [11q13.2/11q13.2]  [t(11;11)(q13;q13)]  
Fusion: TCGAANKRD42 11q14.1 RHOD 11q13.2 BRCA
Fusion: TCGAKDM2A 11q13.2 RHOD 11q13.2 BRCA LUSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRHOD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RHOD
dbVarRHOD
ClinVarRHOD
1000_GenomesRHOD 
Exome Variant ServerRHOD
ExAC (Exome Aggregation Consortium)RHOD (select the gene name)
Genetic variants : HAPMAP29984
Genomic Variants (DGV)RHOD [DGVbeta]
DECIPHERRHOD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRHOD 
Mutations
ICGC Data PortalRHOD 
TCGA Data PortalRHOD 
Broad Tumor PortalRHOD
OASIS PortalRHOD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRHOD  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRHOD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RHOD
DgiDB (Drug Gene Interaction Database)RHOD
DoCM (Curated mutations)RHOD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RHOD (select a term)
intoGenRHOD
Cancer3DRHOD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605781   
Orphanet
MedgenRHOD
Genetic Testing Registry RHOD
NextProtO00212 [Medical]
TSGene29984
GENETestsRHOD
Target ValidationRHOD
Huge Navigator RHOD [HugePedia]
snp3D : Map Gene to Disease29984
BioCentury BCIQRHOD
ClinGenRHOD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29984
Chemical/Pharm GKB GenePA24952
Clinical trialRHOD
Miscellaneous
canSAR (ICR)RHOD (select the gene name)
Probes
Litterature
PubMed43 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRHOD
EVEXRHOD
GoPubMedRHOD
iHOPRHOD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:53:14 CEST 2017

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