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RHOF (ras homolog family member F (in filopodia))

Identity

Alias_namesARHF
ras homolog gene family, member F (in filopodia)
ras homolog family member F (in filopodia)
Alias_symbol (synonym)FLJ20247
RIF
Other alias
HGNC (Hugo) RHOF
LocusID (NCBI) 54509
Atlas_Id 72631
Location 12q24.31  [Link to chromosome band 12q24]
Location_base_pair Starts at 122215660 and ends at 122231594 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RHOF   15703
Cards
Entrez_Gene (NCBI)RHOF  54509  ras homolog family member F (in filopodia)
AliasesARHF; RIF
GeneCards (Weizmann)RHOF
Ensembl hg19 (Hinxton)ENSG00000139725 [Gene_View]  chr12:122215660-122231594 [Contig_View]  RHOF [Vega]
Ensembl hg38 (Hinxton)ENSG00000139725 [Gene_View]  chr12:122215660-122231594 [Contig_View]  RHOF [Vega]
ICGC DataPortalENSG00000139725
TCGA cBioPortalRHOF
AceView (NCBI)RHOF
Genatlas (Paris)RHOF
WikiGenes54509
SOURCE (Princeton)RHOF
Genetics Home Reference (NIH)RHOF
Genomic and cartography
GoldenPath hg19 (UCSC)RHOF  -     chr12:122215660-122231594 -  12q24.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RHOF  -     12q24.31   [Description]    (hg38-Dec_2013)
EnsemblRHOF - 12q24.31 [CytoView hg19]  RHOF - 12q24.31 [CytoView hg38]
Mapping of homologs : NCBIRHOF [Mapview hg19]  RHOF [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF239923 AK000254 AK130459 AK289482 BC018208
RefSeq transcript (Entrez)NM_019034
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929385
Consensus coding sequences : CCDS (NCBI)RHOF
Cluster EST : UnigeneHs.717201 [ NCBI ]
CGAP (NCI)Hs.717201
Alternative Splicing GalleryENSG00000139725
Gene ExpressionRHOF [ NCBI-GEO ]   RHOF [ EBI - ARRAY_EXPRESS ]   RHOF [ SEEK ]   RHOF [ MEM ]
Gene Expression Viewer (FireBrowse)RHOF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54509
GTEX Portal (Tissue expression)RHOF
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HBH0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HBH0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HBH0
Splice isoforms : SwissVarQ9HBH0
PhosPhoSitePlusQ9HBH0
Domaine pattern : Prosite (Expaxy)RHO (PS51420)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase    Small_GTPase_Rho   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Domain families : Smart (EMBL)RHO (SM00174)  
Conserved Domain (NCBI)RHOF
DMDM Disease mutations54509
Blocks (Seattle)RHOF
SuperfamilyQ9HBH0
Human Protein AtlasENSG00000139725
Peptide AtlasQ9HBH0
HPRD15246
IPIIPI00307458   IPI00382965   IPI01018910   
Protein Interaction databases
DIP (DOE-UCLA)Q9HBH0
IntAct (EBI)Q9HBH0
FunCoupENSG00000139725
BioGRIDRHOF
STRING (EMBL)RHOF
ZODIACRHOF
Ontologies - Pathways
QuickGOQ9HBH0
Ontology : AmiGOGTPase activity  GTP binding  cytosol  cytoskeleton  plasma membrane  actin filament organization  small GTPase mediated signal transduction  metabolic process  regulation of small GTPase mediated signal transduction  extracellular exosome  
Ontology : EGO-EBIGTPase activity  GTP binding  cytosol  cytoskeleton  plasma membrane  actin filament organization  small GTPase mediated signal transduction  metabolic process  regulation of small GTPase mediated signal transduction  extracellular exosome  
NDEx NetworkRHOF
Atlas of Cancer Signalling NetworkRHOF
Wikipedia pathwaysRHOF
Orthology - Evolution
OrthoDB54509
GeneTree (enSembl)ENSG00000139725
Phylogenetic Trees/Animal Genes : TreeFamRHOF
HOVERGENQ9HBH0
HOGENOMQ9HBH0
Homologs : HomoloGeneRHOF
Homology/Alignments : Family Browser (UCSC)RHOF
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRHOF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RHOF
dbVarRHOF
ClinVarRHOF
1000_GenomesRHOF 
Exome Variant ServerRHOF
ExAC (Exome Aggregation Consortium)RHOF (select the gene name)
Genetic variants : HAPMAP54509
Genomic Variants (DGV)RHOF [DGVbeta]
DECIPHER (Syndromes)12:122215660-122231594  ENSG00000139725
CONAN: Copy Number AnalysisRHOF 
Mutations
ICGC Data PortalRHOF 
TCGA Data PortalRHOF 
Broad Tumor PortalRHOF
OASIS PortalRHOF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRHOF  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRHOF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RHOF
DgiDB (Drug Gene Interaction Database)RHOF
DoCM (Curated mutations)RHOF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RHOF (select a term)
intoGenRHOF
Cancer3DRHOF(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRHOF
Genetic Testing Registry RHOF
NextProtQ9HBH0 [Medical]
TSGene54509
GENETestsRHOF
Huge Navigator RHOF [HugePedia]
snp3D : Map Gene to Disease54509
BioCentury BCIQRHOF
ClinGenRHOF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54509
Chemical/Pharm GKB GenePA24954
Clinical trialRHOF
Miscellaneous
canSAR (ICR)RHOF (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRHOF
EVEXRHOF
GoPubMedRHOF
iHOPRHOF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:41:03 CET 2017

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