Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RHOJ (ras homolog family member J)

Identity

Alias_namesRASL7B
ARHJ
RAS-like, family 7, member B
ras homolog gene family, member J
Alias_symbol (synonym)FLJ14445
TCL
Other aliasTC10B
HGNC (Hugo) RHOJ
LocusID (NCBI) 57381
Atlas_Id 42112
Location 14q23.2  [Link to chromosome band 14q23]
Location_base_pair Starts at 63204384 and ends at 63293512 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RHOJ (14q23.2) / C6orf52 (6p24.2)RHOJ (14q23.2) / OFCC1 (6p24.3)RHOJ (14q23.2) / YIPF5 (5q31.3)
RHOJ 14q23.2 / C6orf52 6p24.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RHOJ   688
Cards
Entrez_Gene (NCBI)RHOJ  57381  ras homolog family member J
AliasesARHJ; RASL7B; TC10B; TCL
GeneCards (Weizmann)RHOJ
Ensembl hg19 (Hinxton)ENSG00000126785 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000126785 [Gene_View]  chr14:63204384-63293512 [Contig_View]  RHOJ [Vega]
ICGC DataPortalENSG00000126785
TCGA cBioPortalRHOJ
AceView (NCBI)RHOJ
Genatlas (Paris)RHOJ
WikiGenes57381
SOURCE (Princeton)RHOJ
Genetics Home Reference (NIH)RHOJ
Genomic and cartography
GoldenPath hg38 (UCSC)RHOJ  -     chr14:63204384-63293512 +  14q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RHOJ  -     14q23.2   [Description]    (hg19-Feb_2009)
EnsemblRHOJ - 14q23.2 [CytoView hg19]  RHOJ - 14q23.2 [CytoView hg38]
Mapping of homologs : NCBIRHOJ [Mapview hg19]  RHOJ [Mapview hg38]
OMIM607653   
Gene and transcription
Genbank (Entrez)AB209218 AF087862 AF309563 AF498977 AJ276567
RefSeq transcript (Entrez)NM_020663
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RHOJ
Cluster EST : UnigeneHs.656339 [ NCBI ]
CGAP (NCI)Hs.656339
Alternative Splicing GalleryENSG00000126785
Gene ExpressionRHOJ [ NCBI-GEO ]   RHOJ [ EBI - ARRAY_EXPRESS ]   RHOJ [ SEEK ]   RHOJ [ MEM ]
Gene Expression Viewer (FireBrowse)RHOJ [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57381
GTEX Portal (Tissue expression)RHOJ
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H4E5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H4E5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H4E5
Splice isoforms : SwissVarQ9H4E5
PhosPhoSitePlusQ9H4E5
Domaine pattern : Prosite (Expaxy)RHO (PS51420)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Conserved Domain (NCBI)RHOJ
DMDM Disease mutations57381
Blocks (Seattle)RHOJ
SuperfamilyQ9H4E5
Human Protein AtlasENSG00000126785
Peptide AtlasQ9H4E5
HPRD09632
IPIIPI00027952   IPI00249526   IPI01026003   IPI01025905   
Protein Interaction databases
DIP (DOE-UCLA)Q9H4E5
IntAct (EBI)Q9H4E5
FunCoupENSG00000126785
BioGRIDRHOJ
STRING (EMBL)RHOJ
ZODIACRHOJ
Ontologies - Pathways
QuickGOQ9H4E5
Ontology : AmiGOGTPase activity  protein binding  GTP binding  cytosol  plasma membrane  Rho protein signal transduction  regulation of cell shape  actin cytoskeleton organization  regulation of small GTPase mediated signal transduction  retina vasculature morphogenesis in camera-type eye  extracellular exosome  
Ontology : EGO-EBIGTPase activity  protein binding  GTP binding  cytosol  plasma membrane  Rho protein signal transduction  regulation of cell shape  actin cytoskeleton organization  regulation of small GTPase mediated signal transduction  retina vasculature morphogenesis in camera-type eye  extracellular exosome  
NDEx NetworkRHOJ
Atlas of Cancer Signalling NetworkRHOJ
Wikipedia pathwaysRHOJ
Orthology - Evolution
OrthoDB57381
GeneTree (enSembl)ENSG00000126785
Phylogenetic Trees/Animal Genes : TreeFamRHOJ
HOVERGENQ9H4E5
HOGENOMQ9H4E5
Homologs : HomoloGeneRHOJ
Homology/Alignments : Family Browser (UCSC)RHOJ
Gene fusions - Rearrangements
Fusion : MitelmanRHOJ/C6orf52 [14q23.2/6p24.2]  
Fusion : MitelmanRHOJ/OFCC1 [14q23.2/6p24.3]  [t(6;14)(p24;q23)]  
Fusion: TCGARHOJ 14q23.2 C6orf52 6p24.2 GBM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRHOJ [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RHOJ
dbVarRHOJ
ClinVarRHOJ
1000_GenomesRHOJ 
Exome Variant ServerRHOJ
ExAC (Exome Aggregation Consortium)RHOJ (select the gene name)
Genetic variants : HAPMAP57381
Genomic Variants (DGV)RHOJ [DGVbeta]
DECIPHERRHOJ [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRHOJ 
Mutations
ICGC Data PortalRHOJ 
TCGA Data PortalRHOJ 
Broad Tumor PortalRHOJ
OASIS PortalRHOJ [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRHOJ  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRHOJ
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RHOJ
DgiDB (Drug Gene Interaction Database)RHOJ
DoCM (Curated mutations)RHOJ (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RHOJ (select a term)
intoGenRHOJ
Cancer3DRHOJ(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607653   
Orphanet
MedgenRHOJ
Genetic Testing Registry RHOJ
NextProtQ9H4E5 [Medical]
TSGene57381
GENETestsRHOJ
Target ValidationRHOJ
Huge Navigator RHOJ [HugePedia]
snp3D : Map Gene to Disease57381
BioCentury BCIQRHOJ
ClinGenRHOJ
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57381
Chemical/Pharm GKB GenePA24981
Clinical trialRHOJ
Miscellaneous
canSAR (ICR)RHOJ (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRHOJ
EVEXRHOJ
GoPubMedRHOJ
iHOPRHOJ
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:53:15 CEST 2017

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