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RHOT1 (ras homolog family member T1)

Identity

Alias (NCBI)ARHT1
MIRO-1
MIRO1
HGNC (Hugo) RHOT1
HGNC Alias symbMIRO-1
FLJ11040
MIRO1
HGNC Alias namemitochondrial Rho (MIRO) GTPase 1
HGNC Previous nameARHT1
HGNC Previous nameras homolog gene family, member T1
LocusID (NCBI) 55288
Atlas_Id 42114
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 32142454 and ends at 32225771 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PCMTD1 (8q11.23) / RHOT1 (17q11.2)RHOT1 (17q11.2) / ANKRD20A5P (18p11.21)RHOT1 (17q11.2) / CA10 (17q21.33)
RHOT1 (17q11.2) / FGFR1 (8p11.23)RHOT1 (17q11.2) / LRRC37B (17q11.2)RHOT1 (17q11.2) / RHOT1 (17q11.2)
RHOT1 (17q11.2) / SNHG1 (11q12.3)TNKS (8p23.1) / RHOT1 (17q11.2)PCMTD1 8q11.23 / RHOT1 17q11.2
RHOT1 17q11.2 / CA10 17q21.33RHOT1 17q11.2 / FGFR1 8p11.23RHOT1 17q11.2 / LRRC37B 17q11.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)RHOT1   21168
Cards
Entrez_Gene (NCBI)RHOT1    ras homolog family member T1
AliasesARHT1; MIRO-1; MIRO1
GeneCards (Weizmann)RHOT1
Ensembl hg19 (Hinxton)ENSG00000126858 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000126858 [Gene_View]  ENSG00000126858 [Sequence]  chr17:32142454-32225771 [Contig_View]  RHOT1 [Vega]
ICGC DataPortalENSG00000126858
TCGA cBioPortalRHOT1
AceView (NCBI)RHOT1
Genatlas (Paris)RHOT1
SOURCE (Princeton)RHOT1
Genetics Home Reference (NIH)RHOT1
Genomic and cartography
GoldenPath hg38 (UCSC)RHOT1  -     chr17:32142454-32225771 +  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RHOT1  -     17q11.2   [Description]    (hg19-Feb_2009)
GoldenPathRHOT1 - 17q11.2 [CytoView hg19]  RHOT1 - 17q11.2 [CytoView hg38]
ImmunoBaseENSG00000126858
Genome Data Viewer NCBIRHOT1 [Mapview hg19]  
OMIM613888   
Gene and transcription
Genbank (Entrez)AA772711 AJ496730 AJ517412 AK001902 AK022695
RefSeq transcript (Entrez)NM_001033566 NM_001033567 NM_001033568 NM_001288754 NM_001288755 NM_001288758 NM_018307
Consensus coding sequences : CCDS (NCBI)RHOT1
Gene ExpressionRHOT1 [ NCBI-GEO ]   RHOT1 [ EBI - ARRAY_EXPRESS ]   RHOT1 [ SEEK ]   RHOT1 [ MEM ]
Gene Expression Viewer (FireBrowse)RHOT1 [ Firebrowse - Broad ]
GenevisibleExpression of RHOT1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55288
GTEX Portal (Tissue expression)RHOT1
Human Protein AtlasENSG00000126858-RHOT1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RHOT1
Human Protein Atlas [tissue]ENSG00000126858-RHOT1 [tissue]
HPRD15247
Protein Interaction databases
BioGRIDRHOT1
STRING (EMBL)RHOT1
ZODIACRHOT1
Ontologies - Pathways
Litterature
PubMed75 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRHOT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:28:56 CEST 2021

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