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RHOXF1 (Rhox homeobox family member 1)

Identity

Alias_namesRhox homeobox family, member 1
Alias_symbol (synonym)OTEX
PEPP1
Other alias
HGNC (Hugo) RHOXF1
LocusID (NCBI) 158800
Atlas_Id 72633
Location Xq24  [Link to chromosome band Xq24]
Location_base_pair Starts at 120109053 and ends at 120115937 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RHOXF1   29993
Cards
Entrez_Gene (NCBI)RHOXF1  158800  Rhox homeobox family member 1
AliasesOTEX; PEPP1
GeneCards (Weizmann)RHOXF1
Ensembl hg19 (Hinxton)ENSG00000101883 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101883 [Gene_View]  chrX:120109053-120115937 [Contig_View]  RHOXF1 [Vega]
ICGC DataPortalENSG00000101883
TCGA cBioPortalRHOXF1
AceView (NCBI)RHOXF1
Genatlas (Paris)RHOXF1
WikiGenes158800
SOURCE (Princeton)RHOXF1
Genetics Home Reference (NIH)RHOXF1
Genomic and cartography
GoldenPath hg38 (UCSC)RHOXF1  -     chrX:120109053-120115937 -  Xq24   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RHOXF1  -     Xq24   [Description]    (hg19-Feb_2009)
EnsemblRHOXF1 - Xq24 [CytoView hg19]  RHOXF1 - Xq24 [CytoView hg38]
Mapping of homologs : NCBIRHOXF1 [Mapview hg19]  RHOXF1 [Mapview hg38]
OMIM300446   
Gene and transcription
Genbank (Entrez)AY099086 BC069324 BC069529 BC103857 BC103858
RefSeq transcript (Entrez)NM_139282
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RHOXF1
Cluster EST : UnigeneHs.644617 [ NCBI ]
CGAP (NCI)Hs.644617
Alternative Splicing GalleryENSG00000101883
Gene ExpressionRHOXF1 [ NCBI-GEO ]   RHOXF1 [ EBI - ARRAY_EXPRESS ]   RHOXF1 [ SEEK ]   RHOXF1 [ MEM ]
Gene Expression Viewer (FireBrowse)RHOXF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)158800
GTEX Portal (Tissue expression)RHOXF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NHV9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NHV9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NHV9
Splice isoforms : SwissVarQ8NHV9
PhosPhoSitePlusQ8NHV9
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like    Homeobox_CS    Homeobox_dom    HTH_motif   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)RHOXF1
DMDM Disease mutations158800
Blocks (Seattle)RHOXF1
SuperfamilyQ8NHV9
Human Protein AtlasENSG00000101883
Peptide AtlasQ8NHV9
HPRD02345
IPIIPI00169348   
Protein Interaction databases
DIP (DOE-UCLA)Q8NHV9
IntAct (EBI)Q8NHV9
FunCoupENSG00000101883
BioGRIDRHOXF1
STRING (EMBL)RHOXF1
ZODIACRHOXF1
Ontologies - Pathways
QuickGOQ8NHV9
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organism development  gamete generation  positive regulation of gene expression  sexual reproduction  intracellular steroid hormone receptor signaling pathway  sequence-specific DNA binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organism development  gamete generation  positive regulation of gene expression  sexual reproduction  intracellular steroid hormone receptor signaling pathway  sequence-specific DNA binding  
NDEx NetworkRHOXF1
Atlas of Cancer Signalling NetworkRHOXF1
Wikipedia pathwaysRHOXF1
Orthology - Evolution
OrthoDB158800
GeneTree (enSembl)ENSG00000101883
Phylogenetic Trees/Animal Genes : TreeFamRHOXF1
HOVERGENQ8NHV9
HOGENOMQ8NHV9
Homologs : HomoloGeneRHOXF1
Homology/Alignments : Family Browser (UCSC)RHOXF1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRHOXF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RHOXF1
dbVarRHOXF1
ClinVarRHOXF1
1000_GenomesRHOXF1 
Exome Variant ServerRHOXF1
ExAC (Exome Aggregation Consortium)RHOXF1 (select the gene name)
Genetic variants : HAPMAP158800
Genomic Variants (DGV)RHOXF1 [DGVbeta]
DECIPHERRHOXF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRHOXF1 
Mutations
ICGC Data PortalRHOXF1 
TCGA Data PortalRHOXF1 
Broad Tumor PortalRHOXF1
OASIS PortalRHOXF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRHOXF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRHOXF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RHOXF1
DgiDB (Drug Gene Interaction Database)RHOXF1
DoCM (Curated mutations)RHOXF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RHOXF1 (select a term)
intoGenRHOXF1
Cancer3DRHOXF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300446   
Orphanet
MedgenRHOXF1
Genetic Testing Registry RHOXF1
NextProtQ8NHV9 [Medical]
TSGene158800
GENETestsRHOXF1
Target ValidationRHOXF1
Huge Navigator RHOXF1 [HugePedia]
snp3D : Map Gene to Disease158800
BioCentury BCIQRHOXF1
ClinGenRHOXF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD158800
Chemical/Pharm GKB GenePA162401287
Clinical trialRHOXF1
Miscellaneous
canSAR (ICR)RHOXF1 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRHOXF1
EVEXRHOXF1
GoPubMedRHOXF1
iHOPRHOXF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:38:40 CEST 2017

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