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RHOXF2 (Rhox homeobox family member 2)

Identity

Alias (NCBI)CT107
PEPP-2
PEPP2
THG1
HGNC (Hugo) RHOXF2
HGNC Alias symbTHG1
PEPP-2
PEPP2
CT107
HGNC Alias namecancer/testis antigen 107
HGNC Previous nameRhox homeobox family, member 2
LocusID (NCBI) 84528
Atlas_Id 52570
Location Xq24  [Link to chromosome band Xq24]
Location_base_pair Starts at 120070672 and ends at 120077690 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(X;9)(q24;p13) PAX5/RHOXF2


External links

 

Nomenclature
HGNC (Hugo)RHOXF2   30011
Cards
Entrez_Gene (NCBI)RHOXF2    Rhox homeobox family member 2
AliasesCT107; PEPP-2; PEPP2; THG1
GeneCards (Weizmann)RHOXF2
Ensembl hg19 (Hinxton)ENSG00000131721 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131721 [Gene_View]  ENSG00000131721 [Sequence]  chrX:120070672-120077690 [Contig_View]  RHOXF2 [Vega]
ICGC DataPortalENSG00000131721
TCGA cBioPortalRHOXF2
AceView (NCBI)RHOXF2
Genatlas (Paris)RHOXF2
SOURCE (Princeton)RHOXF2
Genetics Home Reference (NIH)RHOXF2
Genomic and cartography
GoldenPath hg38 (UCSC)RHOXF2  -     chrX:120070672-120077690 -  Xq24   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RHOXF2  -     Xq24   [Description]    (hg19-Feb_2009)
GoldenPathRHOXF2 - Xq24 [CytoView hg19]  RHOXF2 - Xq24 [CytoView hg38]
ImmunoBaseENSG00000131721
Genome Data Viewer NCBIRHOXF2 [Mapview hg19]  
OMIM300447   
Gene and transcription
Genbank (Entrez)AF317219 AK058125 AL590526 BC021719
RefSeq transcript (Entrez)NM_032498
Consensus coding sequences : CCDS (NCBI)RHOXF2
Gene ExpressionRHOXF2 [ NCBI-GEO ]   RHOXF2 [ EBI - ARRAY_EXPRESS ]   RHOXF2 [ SEEK ]   RHOXF2 [ MEM ]
Gene Expression Viewer (FireBrowse)RHOXF2 [ Firebrowse - Broad ]
GenevisibleExpression of RHOXF2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84528
GTEX Portal (Tissue expression)RHOXF2
Human Protein AtlasENSG00000131721-RHOXF2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQY4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQY4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQY4
PhosPhoSitePlusQ9BQY4
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like_sf    Homeobox_CS    Homeobox_dom   
Domain families : Pfam (Sanger)Homeodomain (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)RHOXF2
SuperfamilyQ9BQY4
AlphaFold pdb e-kbQ9BQY4   
Human Protein Atlas [tissue]ENSG00000131721-RHOXF2 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q9BQY4
IntAct (EBI)Q9BQY4
BioGRIDRHOXF2
STRING (EMBL)RHOXF2
ZODIACRHOXF2
Ontologies - Pathways
QuickGOQ9BQY4
Ontology : AmiGOchromatin  RNA polymerase II transcription regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  protein binding  nucleus  regulation of transcription by RNA polymerase II  positive regulation of gene expression  identical protein binding  sequence-specific double-stranded DNA binding  
Ontology : EGO-EBIchromatin  RNA polymerase II transcription regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  protein binding  nucleus  regulation of transcription by RNA polymerase II  positive regulation of gene expression  identical protein binding  sequence-specific double-stranded DNA binding  
NDEx NetworkRHOXF2
Atlas of Cancer Signalling NetworkRHOXF2
Wikipedia pathwaysRHOXF2
Orthology - Evolution
OrthoDB84528
GeneTree (enSembl)ENSG00000131721
Phylogenetic Trees/Animal Genes : TreeFamRHOXF2
Homologs : HomoloGeneRHOXF2
Homology/Alignments : Family Browser (UCSC)RHOXF2
Gene fusions - Rearrangements
Fusion : QuiverRHOXF2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRHOXF2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RHOXF2
dbVarRHOXF2
ClinVarRHOXF2
MonarchRHOXF2
1000_GenomesRHOXF2 
Exome Variant ServerRHOXF2
GNOMAD BrowserENSG00000131721
Varsome BrowserRHOXF2
ACMGRHOXF2 variants
VarityQ9BQY4
Genomic Variants (DGV)RHOXF2 [DGVbeta]
DECIPHERRHOXF2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRHOXF2 
Mutations
ICGC Data PortalRHOXF2 
TCGA Data PortalRHOXF2 
Broad Tumor PortalRHOXF2
OASIS PortalRHOXF2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRHOXF2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRHOXF2
Mutations and Diseases : HGMDRHOXF2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRHOXF2
DgiDB (Drug Gene Interaction Database)RHOXF2
DoCM (Curated mutations)RHOXF2
CIViC (Clinical Interpretations of Variants in Cancer)RHOXF2
Cancer3DRHOXF2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300447   
Orphanet
DisGeNETRHOXF2
MedgenRHOXF2
Genetic Testing Registry RHOXF2
NextProtQ9BQY4 [Medical]
GENETestsRHOXF2
Target ValidationRHOXF2
Huge Navigator RHOXF2 [HugePedia]
ClinGenRHOXF2
Clinical trials, drugs, therapy
MyCancerGenomeRHOXF2
Protein Interactions : CTDRHOXF2
Pharm GKB GenePA162401288
PharosQ9BQY4
Clinical trialRHOXF2
Miscellaneous
canSAR (ICR)RHOXF2
HarmonizomeRHOXF2
DataMed IndexRHOXF2
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRHOXF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:28:57 CEST 2021

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