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RHOXF2 (Rhox homeobox family member 2)

Identity

Alias_namesRhox homeobox family
Alias_symbol (synonym)THG1
PEPP-2
PEPP2
CT107
Other alias
HGNC (Hugo) RHOXF2
LocusID (NCBI) 84528
Atlas_Id 52570
Location Xq24  [Link to chromosome band Xq24]
Location_base_pair Starts at 120072264 and ends at 120077742 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RHOXF2   30011
Cards
Entrez_Gene (NCBI)RHOXF2  84528  Rhox homeobox family member 2
AliasesCT107; PEPP-2; PEPP2; THG1
GeneCards (Weizmann)RHOXF2
Ensembl hg19 (Hinxton)ENSG00000131721 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131721 [Gene_View]  chrX:120072264-120077742 [Contig_View]  RHOXF2 [Vega]
ICGC DataPortalENSG00000131721
TCGA cBioPortalRHOXF2
AceView (NCBI)RHOXF2
Genatlas (Paris)RHOXF2
WikiGenes84528
SOURCE (Princeton)RHOXF2
Genetics Home Reference (NIH)RHOXF2
Genomic and cartography
GoldenPath hg38 (UCSC)RHOXF2  -     chrX:120072264-120077742 -  Xq24   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RHOXF2  -     Xq24   [Description]    (hg19-Feb_2009)
EnsemblRHOXF2 - Xq24 [CytoView hg19]  RHOXF2 - Xq24 [CytoView hg38]
Mapping of homologs : NCBIRHOXF2 [Mapview hg19]  RHOXF2 [Mapview hg38]
OMIM300447   
Gene and transcription
Genbank (Entrez)AF317219 AK058125 AL590526 BC021719 DQ890992
RefSeq transcript (Entrez)NM_032498
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RHOXF2
Cluster EST : UnigeneHs.567620 [ NCBI ]
CGAP (NCI)Hs.567620
Alternative Splicing GalleryENSG00000131721
Gene ExpressionRHOXF2 [ NCBI-GEO ]   RHOXF2 [ EBI - ARRAY_EXPRESS ]   RHOXF2 [ SEEK ]   RHOXF2 [ MEM ]
Gene Expression Viewer (FireBrowse)RHOXF2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84528
GTEX Portal (Tissue expression)RHOXF2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQY4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQY4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQY4
Splice isoforms : SwissVarQ9BQY4
PhosPhoSitePlusQ9BQY4
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like    Homeobox_CS    Homeobox_dom   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)RHOXF2
DMDM Disease mutations84528
Blocks (Seattle)RHOXF2
SuperfamilyQ9BQY4
Human Protein AtlasENSG00000131721
Peptide AtlasQ9BQY4
IPIIPI00032523   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQY4
IntAct (EBI)Q9BQY4
FunCoupENSG00000131721
BioGRIDRHOXF2
STRING (EMBL)RHOXF2
ZODIACRHOXF2
Ontologies - Pathways
QuickGOQ9BQY4
Ontology : AmiGOprotein binding  nucleus  regulation of transcription, DNA-templated  positive regulation of gene expression  sequence-specific DNA binding  
Ontology : EGO-EBIprotein binding  nucleus  regulation of transcription, DNA-templated  positive regulation of gene expression  sequence-specific DNA binding  
NDEx NetworkRHOXF2
Atlas of Cancer Signalling NetworkRHOXF2
Wikipedia pathwaysRHOXF2
Orthology - Evolution
OrthoDB84528
GeneTree (enSembl)ENSG00000131721
Phylogenetic Trees/Animal Genes : TreeFamRHOXF2
HOVERGENQ9BQY4
HOGENOMQ9BQY4
Homologs : HomoloGeneRHOXF2
Homology/Alignments : Family Browser (UCSC)RHOXF2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRHOXF2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RHOXF2
dbVarRHOXF2
ClinVarRHOXF2
1000_GenomesRHOXF2 
Exome Variant ServerRHOXF2
ExAC (Exome Aggregation Consortium)RHOXF2 (select the gene name)
Genetic variants : HAPMAP84528
Genomic Variants (DGV)RHOXF2 [DGVbeta]
DECIPHERRHOXF2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRHOXF2 
Mutations
ICGC Data PortalRHOXF2 
TCGA Data PortalRHOXF2 
Broad Tumor PortalRHOXF2
OASIS PortalRHOXF2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRHOXF2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRHOXF2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RHOXF2
DgiDB (Drug Gene Interaction Database)RHOXF2
DoCM (Curated mutations)RHOXF2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RHOXF2 (select a term)
intoGenRHOXF2
Cancer3DRHOXF2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300447   
Orphanet
MedgenRHOXF2
Genetic Testing Registry RHOXF2
NextProtQ9BQY4 [Medical]
TSGene84528
GENETestsRHOXF2
Target ValidationRHOXF2
Huge Navigator RHOXF2 [HugePedia]
snp3D : Map Gene to Disease84528
BioCentury BCIQRHOXF2
ClinGenRHOXF2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84528
Chemical/Pharm GKB GenePA162401288
Clinical trialRHOXF2
Miscellaneous
canSAR (ICR)RHOXF2 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRHOXF2
EVEXRHOXF2
GoPubMedRHOXF2
iHOPRHOXF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:05:50 CEST 2017

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