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RHOXF2B (Rhox homeobox family member 2B)

Identity

Alias_namesRhox homeobox family, member 2B
Other alias-
HGNC (Hugo) RHOXF2B
LocusID (NCBI) 727940
Atlas_Id 72634
Location Xq24  [Link to chromosome band Xq24]
Location_base_pair Starts at 120072264 and ends at 120077742 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RHOXF2B   33519
Cards
Entrez_Gene (NCBI)RHOXF2B  727940  Rhox homeobox family member 2B
Aliases
GeneCards (Weizmann)RHOXF2B
Ensembl hg19 (Hinxton)ENSG00000203989 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203989 [Gene_View]  chrX:120072264-120077742 [Contig_View]  RHOXF2B [Vega]
ICGC DataPortalENSG00000203989
TCGA cBioPortalRHOXF2B
AceView (NCBI)RHOXF2B
Genatlas (Paris)RHOXF2B
WikiGenes727940
SOURCE (Princeton)RHOXF2B
Genetics Home Reference (NIH)RHOXF2B
Genomic and cartography
GoldenPath hg38 (UCSC)RHOXF2B  -     chrX:120072264-120077742 -  Xq24   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RHOXF2B  -     Xq24   [Description]    (hg19-Feb_2009)
EnsemblRHOXF2B - Xq24 [CytoView hg19]  RHOXF2B - Xq24 [CytoView hg38]
Mapping of homologs : NCBIRHOXF2B [Mapview hg19]  RHOXF2B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL590524
RefSeq transcript (Entrez)NM_001099685
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RHOXF2B
Cluster EST : UnigeneHs.567620 [ NCBI ]
CGAP (NCI)Hs.567620
Alternative Splicing GalleryENSG00000203989
Gene ExpressionRHOXF2B [ NCBI-GEO ]   RHOXF2B [ EBI - ARRAY_EXPRESS ]   RHOXF2B [ SEEK ]   RHOXF2B [ MEM ]
Gene Expression Viewer (FireBrowse)RHOXF2B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)727940
GTEX Portal (Tissue expression)RHOXF2B
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C7M4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C7M4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C7M4
Splice isoforms : SwissVarP0C7M4
PhosPhoSitePlusP0C7M4
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like    Homeobox_CS    Homeobox_dom   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)RHOXF2B
DMDM Disease mutations727940
Blocks (Seattle)RHOXF2B
SuperfamilyP0C7M4
Human Protein AtlasENSG00000203989
Peptide AtlasP0C7M4
IPIIPI00644937   
Protein Interaction databases
DIP (DOE-UCLA)P0C7M4
IntAct (EBI)P0C7M4
FunCoupENSG00000203989
BioGRIDRHOXF2B
STRING (EMBL)RHOXF2B
ZODIACRHOXF2B
Ontologies - Pathways
QuickGOP0C7M4
Ontology : AmiGOnucleus  regulation of transcription, DNA-templated  positive regulation of gene expression  sequence-specific DNA binding  
Ontology : EGO-EBInucleus  regulation of transcription, DNA-templated  positive regulation of gene expression  sequence-specific DNA binding  
NDEx NetworkRHOXF2B
Atlas of Cancer Signalling NetworkRHOXF2B
Wikipedia pathwaysRHOXF2B
Orthology - Evolution
OrthoDB727940
GeneTree (enSembl)ENSG00000203989
Phylogenetic Trees/Animal Genes : TreeFamRHOXF2B
HOVERGENP0C7M4
HOGENOMP0C7M4
Homologs : HomoloGeneRHOXF2B
Homology/Alignments : Family Browser (UCSC)RHOXF2B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRHOXF2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RHOXF2B
dbVarRHOXF2B
ClinVarRHOXF2B
1000_GenomesRHOXF2B 
Exome Variant ServerRHOXF2B
ExAC (Exome Aggregation Consortium)RHOXF2B (select the gene name)
Genetic variants : HAPMAP727940
Genomic Variants (DGV)RHOXF2B [DGVbeta]
DECIPHERRHOXF2B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRHOXF2B 
Mutations
ICGC Data PortalRHOXF2B 
TCGA Data PortalRHOXF2B 
Broad Tumor PortalRHOXF2B
OASIS PortalRHOXF2B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRHOXF2B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRHOXF2B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RHOXF2B
DgiDB (Drug Gene Interaction Database)RHOXF2B
DoCM (Curated mutations)RHOXF2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RHOXF2B (select a term)
intoGenRHOXF2B
Cancer3DRHOXF2B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRHOXF2B
Genetic Testing Registry RHOXF2B
NextProtP0C7M4 [Medical]
TSGene727940
GENETestsRHOXF2B
Target ValidationRHOXF2B
Huge Navigator RHOXF2B [HugePedia]
snp3D : Map Gene to Disease727940
BioCentury BCIQRHOXF2B
ClinGenRHOXF2B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD727940
Chemical/Pharm GKB GenePA162401289
Clinical trialRHOXF2B
Miscellaneous
canSAR (ICR)RHOXF2B (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRHOXF2B
EVEXRHOXF2B
GoPubMedRHOXF2B
iHOPRHOXF2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:38:40 CEST 2017

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