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RHPN1-AS1 (RHPN1 antisense RNA 1 (head to head))

Identity

Alias_namesC8orf51
chromosome 8 open reading frame 51
RHPN1 antisense RNA 1 (non-protein coding)
RHPN1 antisense RNA 1
Alias_symbol (synonym)MGC3113
Other alias
HGNC (Hugo) RHPN1-AS1
LocusID (NCBI) 78998
Atlas_Id 72636
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 144448805 and ends at 144450716 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RHPN1-AS1   28457
Cards
Entrez_Gene (NCBI)RHPN1-AS1  78998  RHPN1 antisense RNA 1 (head to head)
AliasesC8orf51
GeneCards (Weizmann)RHPN1-AS1
Ensembl hg19 (Hinxton)ENSG00000254389 [Gene_View]  chr8:144448805-144450716 [Contig_View]  RHPN1-AS1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000254389 [Gene_View]  chr8:144448805-144450716 [Contig_View]  RHPN1-AS1 [Vega]
ICGC DataPortalENSG00000254389
TCGA cBioPortalRHPN1-AS1
AceView (NCBI)RHPN1-AS1
Genatlas (Paris)RHPN1-AS1
WikiGenes78998
SOURCE (Princeton)RHPN1-AS1
Genetics Home Reference (NIH)RHPN1-AS1
Genomic and cartography
GoldenPath hg19 (UCSC)RHPN1-AS1  -     chr8:144448805-144450716 -  8q24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RHPN1-AS1  -     8q24.3   [Description]    (hg38-Dec_2013)
EnsemblRHPN1-AS1 - 8q24.3 [CytoView hg19]  RHPN1-AS1 - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBIRHPN1-AS1 [Mapview hg19]  RHPN1-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026503 BC000203 BI829214 BM685262 BM968345
RefSeq transcript (Entrez)NM_024035
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008046 NW_004929340
Consensus coding sequences : CCDS (NCBI)RHPN1-AS1
Cluster EST : UnigeneHs.618477 [ NCBI ]
CGAP (NCI)Hs.618477
Alternative Splicing GalleryENSG00000254389
Gene ExpressionRHPN1-AS1 [ NCBI-GEO ]   RHPN1-AS1 [ EBI - ARRAY_EXPRESS ]   RHPN1-AS1 [ SEEK ]   RHPN1-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)RHPN1-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)78998
GTEX Portal (Tissue expression)RHPN1-AS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BWJ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BWJ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BWJ2
Splice isoforms : SwissVarQ9BWJ2
PhosPhoSitePlusQ9BWJ2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RHPN1-AS1
DMDM Disease mutations78998
Blocks (Seattle)RHPN1-AS1
SuperfamilyQ9BWJ2
Human Protein AtlasENSG00000254389
Peptide AtlasQ9BWJ2
HPRD08328
IPIIPI00031515   
Protein Interaction databases
DIP (DOE-UCLA)Q9BWJ2
IntAct (EBI)Q9BWJ2
FunCoupENSG00000254389
BioGRIDRHPN1-AS1
STRING (EMBL)RHPN1-AS1
ZODIACRHPN1-AS1
Ontologies - Pathways
QuickGOQ9BWJ2
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkRHPN1-AS1
Atlas of Cancer Signalling NetworkRHPN1-AS1
Wikipedia pathwaysRHPN1-AS1
Orthology - Evolution
OrthoDB78998
GeneTree (enSembl)ENSG00000254389
Phylogenetic Trees/Animal Genes : TreeFamRHPN1-AS1
HOVERGENQ9BWJ2
HOGENOMQ9BWJ2
Homologs : HomoloGeneRHPN1-AS1
Homology/Alignments : Family Browser (UCSC)RHPN1-AS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRHPN1-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RHPN1-AS1
dbVarRHPN1-AS1
ClinVarRHPN1-AS1
1000_GenomesRHPN1-AS1 
Exome Variant ServerRHPN1-AS1
ExAC (Exome Aggregation Consortium)RHPN1-AS1 (select the gene name)
Genetic variants : HAPMAP78998
Genomic Variants (DGV)RHPN1-AS1 [DGVbeta]
DECIPHER (Syndromes)8:144448805-144450716  ENSG00000254389
CONAN: Copy Number AnalysisRHPN1-AS1 
Mutations
ICGC Data PortalRHPN1-AS1 
TCGA Data PortalRHPN1-AS1 
Broad Tumor PortalRHPN1-AS1
OASIS PortalRHPN1-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRHPN1-AS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RHPN1-AS1
DgiDB (Drug Gene Interaction Database)RHPN1-AS1
DoCM (Curated mutations)RHPN1-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RHPN1-AS1 (select a term)
intoGenRHPN1-AS1
Cancer3DRHPN1-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRHPN1-AS1
Genetic Testing Registry RHPN1-AS1
NextProtQ9BWJ2 [Medical]
TSGene78998
GENETestsRHPN1-AS1
Huge Navigator RHPN1-AS1 [HugePedia]
snp3D : Map Gene to Disease78998
BioCentury BCIQRHPN1-AS1
ClinGenRHPN1-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD78998
Chemical/Pharm GKB GenePA142672370
Clinical trialRHPN1-AS1
Miscellaneous
canSAR (ICR)RHPN1-AS1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRHPN1-AS1
EVEXRHPN1-AS1
GoPubMedRHPN1-AS1
iHOPRHPN1-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:41:04 CET 2017

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