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RHPN1 (rhophilin Rho GTPase binding protein 1)

Identity

Alias_symbol (synonym)KIAA1929
RHPN
ODF5
Other aliasRHOPHILIN
HGNC (Hugo) RHPN1
LocusID (NCBI) 114822
Atlas_Id 72635
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 143368855 and ends at 143384220 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RHPN1   19973
Cards
Entrez_Gene (NCBI)RHPN1  114822  rhophilin Rho GTPase binding protein 1
AliasesODF5; RHOPHILIN; RHPN
GeneCards (Weizmann)RHPN1
Ensembl hg19 (Hinxton)ENSG00000158106 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158106 [Gene_View]  chr8:143368855-143384220 [Contig_View]  RHPN1 [Vega]
ICGC DataPortalENSG00000158106
TCGA cBioPortalRHPN1
AceView (NCBI)RHPN1
Genatlas (Paris)RHPN1
WikiGenes114822
SOURCE (Princeton)RHPN1
Genetics Home Reference (NIH)RHPN1
Genomic and cartography
GoldenPath hg38 (UCSC)RHPN1  -     chr8:143368855-143384220 +  8q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RHPN1  -     8q24.3   [Description]    (hg19-Feb_2009)
EnsemblRHPN1 - 8q24.3 [CytoView hg19]  RHPN1 - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBIRHPN1 [Mapview hg19]  RHPN1 [Mapview hg38]
OMIM601031   
Gene and transcription
Genbank (Entrez)AB067516 AY082588 BC012135 BC025767 BX341691
RefSeq transcript (Entrez)NM_052924
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RHPN1
Cluster EST : UnigeneHs.521912 [ NCBI ]
CGAP (NCI)Hs.521912
Alternative Splicing GalleryENSG00000158106
Gene ExpressionRHPN1 [ NCBI-GEO ]   RHPN1 [ EBI - ARRAY_EXPRESS ]   RHPN1 [ SEEK ]   RHPN1 [ MEM ]
Gene Expression Viewer (FireBrowse)RHPN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114822
GTEX Portal (Tissue expression)RHPN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TCX5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TCX5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TCX5
Splice isoforms : SwissVarQ8TCX5
PhosPhoSitePlusQ8TCX5
Domaine pattern : Prosite (Expaxy)BRO1 (PS51180)    PDZ (PS50106)   
Domains : Interpro (EBI)BRO1_dom    HR1_rho-bd    PDZ   
Domain families : Pfam (Sanger)BRO1 (PF03097)    HR1 (PF02185)    PDZ (PF00595)   
Domain families : Pfam (NCBI)pfam03097    pfam02185    pfam00595   
Domain families : Smart (EMBL)BRO1 (SM01041)  Hr1 (SM00742)  PDZ (SM00228)  
Conserved Domain (NCBI)RHPN1
DMDM Disease mutations114822
Blocks (Seattle)RHPN1
SuperfamilyQ8TCX5
Human Protein AtlasENSG00000158106
Peptide AtlasQ8TCX5
HPRD17973
IPIIPI00154752   IPI00607856   
Protein Interaction databases
DIP (DOE-UCLA)Q8TCX5
IntAct (EBI)Q8TCX5
FunCoupENSG00000158106
BioGRIDRHPN1
STRING (EMBL)RHPN1
ZODIACRHPN1
Ontologies - Pathways
QuickGOQ8TCX5
Ontology : AmiGOprotein binding  cytosol  signal transduction  
Ontology : EGO-EBIprotein binding  cytosol  signal transduction  
NDEx NetworkRHPN1
Atlas of Cancer Signalling NetworkRHPN1
Wikipedia pathwaysRHPN1
Orthology - Evolution
OrthoDB114822
GeneTree (enSembl)ENSG00000158106
Phylogenetic Trees/Animal Genes : TreeFamRHPN1
HOVERGENQ8TCX5
HOGENOMQ8TCX5
Homologs : HomoloGeneRHPN1
Homology/Alignments : Family Browser (UCSC)RHPN1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRHPN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RHPN1
dbVarRHPN1
ClinVarRHPN1
1000_GenomesRHPN1 
Exome Variant ServerRHPN1
ExAC (Exome Aggregation Consortium)RHPN1 (select the gene name)
Genetic variants : HAPMAP114822
Genomic Variants (DGV)RHPN1 [DGVbeta]
DECIPHERRHPN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRHPN1 
Mutations
ICGC Data PortalRHPN1 
TCGA Data PortalRHPN1 
Broad Tumor PortalRHPN1
OASIS PortalRHPN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRHPN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRHPN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RHPN1
DgiDB (Drug Gene Interaction Database)RHPN1
DoCM (Curated mutations)RHPN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RHPN1 (select a term)
intoGenRHPN1
Cancer3DRHPN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601031   
Orphanet
MedgenRHPN1
Genetic Testing Registry RHPN1
NextProtQ8TCX5 [Medical]
TSGene114822
GENETestsRHPN1
Target ValidationRHPN1
Huge Navigator RHPN1 [HugePedia]
snp3D : Map Gene to Disease114822
BioCentury BCIQRHPN1
ClinGenRHPN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114822
Chemical/Pharm GKB GenePA134987144
Clinical trialRHPN1
Miscellaneous
canSAR (ICR)RHPN1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRHPN1
EVEXRHPN1
GoPubMedRHPN1
iHOPRHPN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:36:11 CEST 2017

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