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RIBC1 (RIB43A domain with coiled-coils 1)

Identity

Alias_symbol (synonym)FLJ32783
Other alias2610028I09Rik
HGNC (Hugo) RIBC1
LocusID (NCBI) 158787
Atlas_Id 72637
Location Xp11.22  [Link to chromosome band Xp11]
Location_base_pair Starts at 53422856 and ends at 53431120 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RIBC1   26537
Cards
Entrez_Gene (NCBI)RIBC1  158787  RIB43A domain with coiled-coils 1
Aliases2610028I09Rik
GeneCards (Weizmann)RIBC1
Ensembl hg19 (Hinxton)ENSG00000158423 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158423 [Gene_View]  chrX:53422856-53431120 [Contig_View]  RIBC1 [Vega]
ICGC DataPortalENSG00000158423
TCGA cBioPortalRIBC1
AceView (NCBI)RIBC1
Genatlas (Paris)RIBC1
WikiGenes158787
SOURCE (Princeton)RIBC1
Genetics Home Reference (NIH)RIBC1
Genomic and cartography
GoldenPath hg38 (UCSC)RIBC1  -     chrX:53422856-53431120 +  Xp11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RIBC1  -     Xp11.22   [Description]    (hg19-Feb_2009)
EnsemblRIBC1 - Xp11.22 [CytoView hg19]  RIBC1 - Xp11.22 [CytoView hg38]
Mapping of homologs : NCBIRIBC1 [Mapview hg19]  RIBC1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI127598 AK057345 AK290346 AK292871 AK304179
RefSeq transcript (Entrez)NM_001031745 NM_001267053 NM_144968
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RIBC1
Cluster EST : UnigeneHs.351743 [ NCBI ]
CGAP (NCI)Hs.351743
Alternative Splicing GalleryENSG00000158423
Gene ExpressionRIBC1 [ NCBI-GEO ]   RIBC1 [ EBI - ARRAY_EXPRESS ]   RIBC1 [ SEEK ]   RIBC1 [ MEM ]
Gene Expression Viewer (FireBrowse)RIBC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)158787
GTEX Portal (Tissue expression)RIBC1
Human Protein AtlasENSG00000158423-RIBC1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N443   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N443  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N443
Splice isoforms : SwissVarQ8N443
PhosPhoSitePlusQ8N443
Domains : Interpro (EBI)RIB43A   
Domain families : Pfam (Sanger)RIB43A (PF05914)   
Domain families : Pfam (NCBI)pfam05914   
Conserved Domain (NCBI)RIBC1
DMDM Disease mutations158787
Blocks (Seattle)RIBC1
SuperfamilyQ8N443
Human Protein Atlas [tissue]ENSG00000158423-RIBC1 [tissue]
Peptide AtlasQ8N443
HPRD06553
IPIIPI00395886   IPI00059294   IPI00910841   IPI00644716   
Protein Interaction databases
DIP (DOE-UCLA)Q8N443
IntAct (EBI)Q8N443
FunCoupENSG00000158423
BioGRIDRIBC1
STRING (EMBL)RIBC1
ZODIACRIBC1
Ontologies - Pathways
QuickGOQ8N443
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkRIBC1
Atlas of Cancer Signalling NetworkRIBC1
Wikipedia pathwaysRIBC1
Orthology - Evolution
OrthoDB158787
GeneTree (enSembl)ENSG00000158423
Phylogenetic Trees/Animal Genes : TreeFamRIBC1
HOVERGENQ8N443
HOGENOMQ8N443
Homologs : HomoloGeneRIBC1
Homology/Alignments : Family Browser (UCSC)RIBC1
Gene fusions - Rearrangements
Tumor Fusion PortalRIBC1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRIBC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RIBC1
dbVarRIBC1
ClinVarRIBC1
1000_GenomesRIBC1 
Exome Variant ServerRIBC1
ExAC (Exome Aggregation Consortium)ENSG00000158423
GNOMAD BrowserENSG00000158423
Genetic variants : HAPMAP158787
Genomic Variants (DGV)RIBC1 [DGVbeta]
DECIPHERRIBC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRIBC1 
Mutations
ICGC Data PortalRIBC1 
TCGA Data PortalRIBC1 
Broad Tumor PortalRIBC1
OASIS PortalRIBC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRIBC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRIBC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RIBC1
DgiDB (Drug Gene Interaction Database)RIBC1
DoCM (Curated mutations)RIBC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RIBC1 (select a term)
intoGenRIBC1
Cancer3DRIBC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRIBC1
MedgenRIBC1
Genetic Testing Registry RIBC1
NextProtQ8N443 [Medical]
TSGene158787
GENETestsRIBC1
Target ValidationRIBC1
Huge Navigator RIBC1 [HugePedia]
snp3D : Map Gene to Disease158787
BioCentury BCIQRIBC1
ClinGenRIBC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD158787
Chemical/Pharm GKB GenePA134903330
Clinical trialRIBC1
Miscellaneous
canSAR (ICR)RIBC1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRIBC1
EVEXRIBC1
GoPubMedRIBC1
iHOPRIBC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:00:29 CET 2017

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