Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RIBC2 (RIB43A domain with coiled-coils 2)

Identity

Alias_namesC22orf11
chromosome 22 open reading frame 11
Alias_symbol (synonym)DKFZp566F0546
FLJ25720
Other aliasTRIB
HGNC (Hugo) RIBC2
LocusID (NCBI) 26150
Atlas_Id 72638
Location 22q13.31  [Link to chromosome band 22q13]
Location_base_pair Starts at 45413691 and ends at 45432422 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FBLN1 (22q13.31) / RIBC2 (22q13.31)TBC1D22A (22q13.31) / RIBC2 (22q13.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RIBC2   13241
Cards
Entrez_Gene (NCBI)RIBC2  26150  RIB43A domain with coiled-coils 2
AliasesC22orf11; TRIB
GeneCards (Weizmann)RIBC2
Ensembl hg19 (Hinxton)ENSG00000128408 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000128408 [Gene_View]  chr22:45413691-45432422 [Contig_View]  RIBC2 [Vega]
ICGC DataPortalENSG00000128408
TCGA cBioPortalRIBC2
AceView (NCBI)RIBC2
Genatlas (Paris)RIBC2
WikiGenes26150
SOURCE (Princeton)RIBC2
Genetics Home Reference (NIH)RIBC2
Genomic and cartography
GoldenPath hg38 (UCSC)RIBC2  -     chr22:45413691-45432422 +  22q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RIBC2  -     22q13.31   [Description]    (hg19-Feb_2009)
EnsemblRIBC2 - 22q13.31 [CytoView hg19]  RIBC2 - 22q13.31 [CytoView hg38]
Mapping of homologs : NCBIRIBC2 [Mapview hg19]  RIBC2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK098586 AK225722 AL050075 AL442116 BC003024
RefSeq transcript (Entrez)NM_015653
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RIBC2
Cluster EST : UnigeneHs.475110 [ NCBI ]
CGAP (NCI)Hs.475110
Alternative Splicing GalleryENSG00000128408
Gene ExpressionRIBC2 [ NCBI-GEO ]   RIBC2 [ EBI - ARRAY_EXPRESS ]   RIBC2 [ SEEK ]   RIBC2 [ MEM ]
Gene Expression Viewer (FireBrowse)RIBC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26150
GTEX Portal (Tissue expression)RIBC2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H4K1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H4K1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H4K1
Splice isoforms : SwissVarQ9H4K1
PhosPhoSitePlusQ9H4K1
Domains : Interpro (EBI)RIB43A   
Domain families : Pfam (Sanger)RIB43A (PF05914)   
Domain families : Pfam (NCBI)pfam05914   
Conserved Domain (NCBI)RIBC2
DMDM Disease mutations26150
Blocks (Seattle)RIBC2
SuperfamilyQ9H4K1
Human Protein AtlasENSG00000128408
Peptide AtlasQ9H4K1
HPRD11493
IPIIPI00024111   
Protein Interaction databases
DIP (DOE-UCLA)Q9H4K1
IntAct (EBI)Q9H4K1
FunCoupENSG00000128408
BioGRIDRIBC2
STRING (EMBL)RIBC2
ZODIACRIBC2
Ontologies - Pathways
QuickGOQ9H4K1
Ontology : AmiGOprotein binding  nucleus  
Ontology : EGO-EBIprotein binding  nucleus  
NDEx NetworkRIBC2
Atlas of Cancer Signalling NetworkRIBC2
Wikipedia pathwaysRIBC2
Orthology - Evolution
OrthoDB26150
GeneTree (enSembl)ENSG00000128408
Phylogenetic Trees/Animal Genes : TreeFamRIBC2
HOVERGENQ9H4K1
HOGENOMQ9H4K1
Homologs : HomoloGeneRIBC2
Homology/Alignments : Family Browser (UCSC)RIBC2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRIBC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RIBC2
dbVarRIBC2
ClinVarRIBC2
1000_GenomesRIBC2 
Exome Variant ServerRIBC2
ExAC (Exome Aggregation Consortium)RIBC2 (select the gene name)
Genetic variants : HAPMAP26150
Genomic Variants (DGV)RIBC2 [DGVbeta]
DECIPHERRIBC2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRIBC2 
Mutations
ICGC Data PortalRIBC2 
TCGA Data PortalRIBC2 
Broad Tumor PortalRIBC2
OASIS PortalRIBC2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRIBC2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRIBC2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RIBC2
DgiDB (Drug Gene Interaction Database)RIBC2
DoCM (Curated mutations)RIBC2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RIBC2 (select a term)
intoGenRIBC2
Cancer3DRIBC2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRIBC2
Genetic Testing Registry RIBC2
NextProtQ9H4K1 [Medical]
TSGene26150
GENETestsRIBC2
Target ValidationRIBC2
Huge Navigator RIBC2 [HugePedia]
snp3D : Map Gene to Disease26150
BioCentury BCIQRIBC2
ClinGenRIBC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26150
Chemical/Pharm GKB GenePA134967342
Clinical trialRIBC2
Miscellaneous
canSAR (ICR)RIBC2 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRIBC2
EVEXRIBC2
GoPubMedRIBC2
iHOPRIBC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:36:11 CEST 2017

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