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RIDA (reactive intermediate imine deaminase A homolog)

Identity

Alias_namesHRSP12
heat-responsive protein 12
Alias_symbol (synonym)UK114
P14.5
PSP
Other alias
HGNC (Hugo) RIDA
LocusID (NCBI) 10247
Atlas_Id 56030
Location 8q22.2  [Link to chromosome band 8q22]
Location_base_pair Starts at 98102339 and ends at 98117190 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RIDA   16897
Cards
Entrez_Gene (NCBI)RIDA  10247  reactive intermediate imine deaminase A homolog
AliasesHRSP12; P14.5; PSP; UK114
GeneCards (Weizmann)RIDA
Ensembl hg19 (Hinxton)ENSG00000132541 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132541 [Gene_View]  chr8:98102339-98117190 [Contig_View]  RIDA [Vega]
ICGC DataPortalENSG00000132541
TCGA cBioPortalRIDA
AceView (NCBI)RIDA
Genatlas (Paris)RIDA
WikiGenes10247
SOURCE (Princeton)RIDA
Genetics Home Reference (NIH)RIDA
Genomic and cartography
GoldenPath hg38 (UCSC)RIDA  -     chr8:98102339-98117190 -  8q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RIDA  -     8q22.2   [Description]    (hg19-Feb_2009)
EnsemblRIDA - 8q22.2 [CytoView hg19]  RIDA - 8q22.2 [CytoView hg38]
Mapping of homologs : NCBIRIDA [Mapview hg19]  RIDA [Mapview hg38]
OMIM602487   
Gene and transcription
Genbank (Entrez)BC010280 BC012592 BC093059 BX348173 CR456844
RefSeq transcript (Entrez)NM_005836
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RIDA
Cluster EST : UnigeneHs.18426 [ NCBI ]
CGAP (NCI)Hs.18426
Alternative Splicing GalleryENSG00000132541
Gene ExpressionRIDA [ NCBI-GEO ]   RIDA [ EBI - ARRAY_EXPRESS ]   RIDA [ SEEK ]   RIDA [ MEM ]
Gene Expression Viewer (FireBrowse)RIDA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10247
GTEX Portal (Tissue expression)RIDA
Human Protein AtlasENSG00000132541-RIDA [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP52758   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP52758  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP52758
Splice isoforms : SwissVarP52758
Catalytic activity : Enzyme3.1.-.- [ Enzyme-Expasy ]   3.1.-.-3.1.-.- [ IntEnz-EBI ]   3.1.-.- [ BRENDA ]   3.1.-.- [ KEGG ]   
PhosPhoSitePlusP52758
Domaine pattern : Prosite (Expaxy)UPF0076 (PS01094)   
Domains : Interpro (EBI)Endoribo_LPSP/chorism_mut-like    RidA    RidA_CS    YjgF/YER057c/UK114   
Domain families : Pfam (Sanger)Ribonuc_L-PSP (PF01042)   
Domain families : Pfam (NCBI)pfam01042   
Conserved Domain (NCBI)RIDA
DMDM Disease mutations10247
Blocks (Seattle)RIDA
PDB (SRS)1ONI   
PDB (PDBSum)1ONI   
PDB (IMB)1ONI   
PDB (RSDB)1ONI   
Structural Biology KnowledgeBase1ONI   
SCOP (Structural Classification of Proteins)1ONI   
CATH (Classification of proteins structures)1ONI   
SuperfamilyP52758
Human Protein Atlas [tissue]ENSG00000132541-RIDA [tissue]
Peptide AtlasP52758
HPRD03924
IPIIPI00005038   IPI00974168   IPI00974387   IPI00976364   IPI01009241   
Protein Interaction databases
DIP (DOE-UCLA)P52758
IntAct (EBI)P52758
FunCoupENSG00000132541
BioGRIDRIDA
STRING (EMBL)RIDA
ZODIACRIDA
Ontologies - Pathways
QuickGOP52758
Ontology : AmiGOkidney development  RNA binding  nucleus  cytoplasm  mitochondrion  peroxisome  cytosol  regulation of translational termination  brain development  endoribonuclease activity, producing 3'-phosphomonoesters  negative regulation of translation  lung development  response to lipid  long-chain fatty acid binding  protein homodimerization activity  transition metal ion binding  negative regulation of epithelial cell proliferation  extracellular exosome  G1 to G0 transition  RNA phosphodiester bond hydrolysis, endonucleolytic  response to salt  platinum binding  xenon atom binding  
Ontology : EGO-EBIkidney development  RNA binding  nucleus  cytoplasm  mitochondrion  peroxisome  cytosol  regulation of translational termination  brain development  endoribonuclease activity, producing 3'-phosphomonoesters  negative regulation of translation  lung development  response to lipid  long-chain fatty acid binding  protein homodimerization activity  transition metal ion binding  negative regulation of epithelial cell proliferation  extracellular exosome  G1 to G0 transition  RNA phosphodiester bond hydrolysis, endonucleolytic  response to salt  platinum binding  xenon atom binding  
NDEx NetworkRIDA
Atlas of Cancer Signalling NetworkRIDA
Wikipedia pathwaysRIDA
Orthology - Evolution
OrthoDB10247
GeneTree (enSembl)ENSG00000132541
Phylogenetic Trees/Animal Genes : TreeFamRIDA
HOVERGENP52758
HOGENOMP52758
Homologs : HomoloGeneRIDA
Homology/Alignments : Family Browser (UCSC)RIDA
Gene fusions - Rearrangements
Tumor Fusion PortalRIDA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRIDA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RIDA
dbVarRIDA
ClinVarRIDA
1000_GenomesRIDA 
Exome Variant ServerRIDA
ExAC (Exome Aggregation Consortium)ENSG00000132541
GNOMAD BrowserENSG00000132541
Genetic variants : HAPMAP10247
Genomic Variants (DGV)RIDA [DGVbeta]
DECIPHERRIDA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRIDA 
Mutations
ICGC Data PortalRIDA 
TCGA Data PortalRIDA 
Broad Tumor PortalRIDA
OASIS PortalRIDA [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRIDA
BioMutasearch RIDA
DgiDB (Drug Gene Interaction Database)RIDA
DoCM (Curated mutations)RIDA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RIDA (select a term)
intoGenRIDA
Cancer3DRIDA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602487   
Orphanet
DisGeNETRIDA
MedgenRIDA
Genetic Testing Registry RIDA
NextProtP52758 [Medical]
TSGene10247
GENETestsRIDA
Target ValidationRIDA
Huge Navigator RIDA [HugePedia]
snp3D : Map Gene to Disease10247
BioCentury BCIQRIDA
ClinGenRIDA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10247
Chemical/Pharm GKB GenePA134890258
Clinical trialRIDA
Miscellaneous
canSAR (ICR)RIDA (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRIDA
EVEXRIDA
GoPubMedRIDA
iHOPRIDA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:32:25 CET 2017

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