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RIIAD1 (regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1)

Identity

Alias_namesNCRNA00166
C1orf230
non-protein coding RNA 166
chromosome 1 open reading frame 230
Alias_symbol (synonym)FLJ36032
Other alias
HGNC (Hugo) RIIAD1
LocusID (NCBI) 284485
Atlas_Id 72642
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 151721537 and ends at 151729606 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARNT (1q21.3) / RIIAD1 (1q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RIIAD1   26686
Cards
Entrez_Gene (NCBI)RIIAD1  284485  regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1
AliasesC1orf230; NCRNA00166
GeneCards (Weizmann)RIIAD1
Ensembl hg19 (Hinxton)ENSG00000178796 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178796 [Gene_View]  chr1:151721537-151729606 [Contig_View]  RIIAD1 [Vega]
ICGC DataPortalENSG00000178796
TCGA cBioPortalRIIAD1
AceView (NCBI)RIIAD1
Genatlas (Paris)RIIAD1
WikiGenes284485
SOURCE (Princeton)RIIAD1
Genetics Home Reference (NIH)RIIAD1
Genomic and cartography
GoldenPath hg38 (UCSC)RIIAD1  -     chr1:151721537-151729606 +  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RIIAD1  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblRIIAD1 - 1q21.3 [CytoView hg19]  RIIAD1 - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBIRIIAD1 [Mapview hg19]  RIIAD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA393535 CK300240
RefSeq transcript (Entrez)NM_001144956
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RIIAD1
Cluster EST : UnigeneHs.297967 [ NCBI ]
CGAP (NCI)Hs.297967
Alternative Splicing GalleryENSG00000178796
Gene ExpressionRIIAD1 [ NCBI-GEO ]   RIIAD1 [ EBI - ARRAY_EXPRESS ]   RIIAD1 [ SEEK ]   RIIAD1 [ MEM ]
Gene Expression Viewer (FireBrowse)RIIAD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284485
GTEX Portal (Tissue expression)RIIAD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NNX1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NNX1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NNX1
Splice isoforms : SwissVarA6NNX1
PhosPhoSitePlusA6NNX1
Domains : Interpro (EBI)cAMP_dep_PK_reg_su_I/II_a/b   
Domain families : Pfam (Sanger)RIIa (PF02197)   
Domain families : Pfam (NCBI)pfam02197   
Conserved Domain (NCBI)RIIAD1
DMDM Disease mutations284485
Blocks (Seattle)RIIAD1
SuperfamilyA6NNX1
Human Protein AtlasENSG00000178796
Peptide AtlasA6NNX1
IPIIPI00879068   IPI00167851   IPI00945315   
Protein Interaction databases
DIP (DOE-UCLA)A6NNX1
IntAct (EBI)A6NNX1
FunCoupENSG00000178796
BioGRIDRIIAD1
STRING (EMBL)RIIAD1
ZODIACRIIAD1
Ontologies - Pathways
QuickGOA6NNX1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkRIIAD1
Atlas of Cancer Signalling NetworkRIIAD1
Wikipedia pathwaysRIIAD1
Orthology - Evolution
OrthoDB284485
GeneTree (enSembl)ENSG00000178796
Phylogenetic Trees/Animal Genes : TreeFamRIIAD1
HOVERGENA6NNX1
HOGENOMA6NNX1
Homologs : HomoloGeneRIIAD1
Homology/Alignments : Family Browser (UCSC)RIIAD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRIIAD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RIIAD1
dbVarRIIAD1
ClinVarRIIAD1
1000_GenomesRIIAD1 
Exome Variant ServerRIIAD1
ExAC (Exome Aggregation Consortium)RIIAD1 (select the gene name)
Genetic variants : HAPMAP284485
Genomic Variants (DGV)RIIAD1 [DGVbeta]
DECIPHERRIIAD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRIIAD1 
Mutations
ICGC Data PortalRIIAD1 
TCGA Data PortalRIIAD1 
Broad Tumor PortalRIIAD1
OASIS PortalRIIAD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRIIAD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRIIAD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RIIAD1
DgiDB (Drug Gene Interaction Database)RIIAD1
DoCM (Curated mutations)RIIAD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RIIAD1 (select a term)
intoGenRIIAD1
Cancer3DRIIAD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRIIAD1
Genetic Testing Registry RIIAD1
NextProtA6NNX1 [Medical]
TSGene284485
GENETestsRIIAD1
Target ValidationRIIAD1
Huge Navigator RIIAD1 [HugePedia]
snp3D : Map Gene to Disease284485
BioCentury BCIQRIIAD1
ClinGenRIIAD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284485
Chemical/Pharm GKB GenePA165750490
Clinical trialRIIAD1
Miscellaneous
canSAR (ICR)RIIAD1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRIIAD1
EVEXRIIAD1
GoPubMedRIIAD1
iHOPRIIAD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:38:42 CEST 2017

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