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RILP (Rab interacting lysosomal protein)

Identity

Alias_symbol (synonym)FLJ31193
Other aliasPP10141
HGNC (Hugo) RILP
LocusID (NCBI) 83547
Atlas_Id 50721
Location 17p13.3  [Link to chromosome band 17p13]
Location_base_pair Starts at 1646151 and ends at 1650098 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RILP   30266
Cards
Entrez_Gene (NCBI)RILP  83547  Rab interacting lysosomal protein
AliasesPP10141
GeneCards (Weizmann)RILP
Ensembl hg19 (Hinxton)ENSG00000167705 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167705 [Gene_View]  chr17:1646151-1650098 [Contig_View]  RILP [Vega]
ICGC DataPortalENSG00000167705
TCGA cBioPortalRILP
AceView (NCBI)RILP
Genatlas (Paris)RILP
WikiGenes83547
SOURCE (Princeton)RILP
Genetics Home Reference (NIH)RILP
Genomic and cartography
GoldenPath hg38 (UCSC)RILP  -     chr17:1646151-1650098 -  17p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RILP  -     17p13.3   [Description]    (hg19-Feb_2009)
EnsemblRILP - 17p13.3 [CytoView hg19]  RILP - 17p13.3 [CytoView hg38]
Mapping of homologs : NCBIRILP [Mapview hg19]  RILP [Mapview hg38]
OMIM607848   
Gene and transcription
Genbank (Entrez)AF370391 AJ278711 AJ404317 AK055755 AK314767
RefSeq transcript (Entrez)NM_031430
RefSeq genomic (Entrez)NC_000017 NC_018928 NG_033061 NT_187611
Consensus coding sequences : CCDS (NCBI)RILP
Cluster EST : UnigeneHs.534497 [ NCBI ]
CGAP (NCI)Hs.534497
Alternative Splicing GalleryENSG00000167705
Gene ExpressionRILP [ NCBI-GEO ]   RILP [ EBI - ARRAY_EXPRESS ]   RILP [ SEEK ]   RILP [ MEM ]
Gene Expression Viewer (FireBrowse)RILP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83547
GTEX Portal (Tissue expression)RILP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96NA2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96NA2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96NA2
Splice isoforms : SwissVarQ96NA2
PhosPhoSitePlusQ96NA2
Domaine pattern : Prosite (Expaxy)RH1 (PS51776)    RH2 (PS51777)   
Domains : Interpro (EBI)JNK/Rab-associated_protein-1_N    RILP   
Domain families : Pfam (Sanger)Jnk-SapK_ap_N (PF09744)    RILP (PF11461)   
Domain families : Pfam (NCBI)pfam09744    pfam11461   
Conserved Domain (NCBI)RILP
DMDM Disease mutations83547
Blocks (Seattle)RILP
PDB (SRS)1YHN   
PDB (PDBSum)1YHN   
PDB (IMB)1YHN   
PDB (RSDB)1YHN   
Structural Biology KnowledgeBase1YHN   
SCOP (Structural Classification of Proteins)1YHN   
CATH (Classification of proteins structures)1YHN   
SuperfamilyQ96NA2
Human Protein AtlasENSG00000167705
Peptide AtlasQ96NA2
HPRD09706
IPIIPI00289188   IPI00654568   
Protein Interaction databases
DIP (DOE-UCLA)Q96NA2
IntAct (EBI)Q96NA2
FunCoupENSG00000167705
BioGRIDRILP
STRING (EMBL)RILP
ZODIACRILP
Ontologies - Pathways
QuickGOQ96NA2
Ontology : AmiGOprotein binding  mitochondrion  lysosome  lysosomal membrane  lysosomal membrane  late endosome  late endosome  cytosol  endosome to lysosome transport  regulation of multivesicular body size  protein transport  Rab GTPase binding  Rab GTPase binding  antigen processing and presentation of exogenous peptide antigen via MHC class II  phagocytic vesicle membrane  small GTPase binding  late endosome membrane  endosome transport via multivesicular body sorting pathway  ciliary basal body  negative regulation of protein catabolic process  protein complex  early endosome to late endosome transport  positive regulation of protein catabolic process  protein dimerization activity  dynein light intermediate chain binding  cilium assembly  intralumenal vesicle formation  
Ontology : EGO-EBIprotein binding  mitochondrion  lysosome  lysosomal membrane  lysosomal membrane  late endosome  late endosome  cytosol  endosome to lysosome transport  regulation of multivesicular body size  protein transport  Rab GTPase binding  Rab GTPase binding  antigen processing and presentation of exogenous peptide antigen via MHC class II  phagocytic vesicle membrane  small GTPase binding  late endosome membrane  endosome transport via multivesicular body sorting pathway  ciliary basal body  negative regulation of protein catabolic process  protein complex  early endosome to late endosome transport  positive regulation of protein catabolic process  protein dimerization activity  dynein light intermediate chain binding  cilium assembly  intralumenal vesicle formation  
Pathways : KEGGPhagosome    Salmonella infection   
NDEx NetworkRILP
Atlas of Cancer Signalling NetworkRILP
Wikipedia pathwaysRILP
Orthology - Evolution
OrthoDB83547
GeneTree (enSembl)ENSG00000167705
Phylogenetic Trees/Animal Genes : TreeFamRILP
HOVERGENQ96NA2
HOGENOMQ96NA2
Homologs : HomoloGeneRILP
Homology/Alignments : Family Browser (UCSC)RILP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRILP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RILP
dbVarRILP
ClinVarRILP
1000_GenomesRILP 
Exome Variant ServerRILP
ExAC (Exome Aggregation Consortium)RILP (select the gene name)
Genetic variants : HAPMAP83547
Genomic Variants (DGV)RILP [DGVbeta]
DECIPHERRILP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRILP 
Mutations
ICGC Data PortalRILP 
TCGA Data PortalRILP 
Broad Tumor PortalRILP
OASIS PortalRILP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRILP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRILP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch RILP
DgiDB (Drug Gene Interaction Database)RILP
DoCM (Curated mutations)RILP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RILP (select a term)
intoGenRILP
Cancer3DRILP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607848   
Orphanet
MedgenRILP
Genetic Testing Registry RILP
NextProtQ96NA2 [Medical]
TSGene83547
GENETestsRILP
Target ValidationRILP
Huge Navigator RILP [HugePedia]
snp3D : Map Gene to Disease83547
BioCentury BCIQRILP
ClinGenRILP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83547
Chemical/Pharm GKB GenePA134915969
Clinical trialRILP
Miscellaneous
canSAR (ICR)RILP (select the gene name)
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRILP
EVEXRILP
GoPubMedRILP
iHOPRILP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:28:51 CEST 2017

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