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RILPL2 (Rab interacting lysosomal protein like 2)

Identity

Alias_namesRab interacting lysosomal protein-like 2
Alias_symbol (synonym)MGC7036
FLJ30380
FLJ32372
Other aliasRLP2
HGNC (Hugo) RILPL2
LocusID (NCBI) 196383
Atlas_Id 72644
Location 12q24.31  [Link to chromosome band 12q24]
Location_base_pair Starts at 123415039 and ends at 123436733 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CLIP1 (12q24.31) / RILPL2 (12q24.31)KMT5A (12q24.31) / RILPL2 (12q24.31)MXD1 (2p13.3) / RILPL2 (12q24.31)
RILPL2 (12q24.31) / HNRNPD (4q21.22)RILPL2 (12q24.31) / RILPL2 (12q24.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RILPL2   28787
Cards
Entrez_Gene (NCBI)RILPL2  196383  Rab interacting lysosomal protein like 2
AliasesRLP2
GeneCards (Weizmann)RILPL2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:123415039-123436733 [Contig_View]  RILPL2 [Vega]
TCGA cBioPortalRILPL2
AceView (NCBI)RILPL2
Genatlas (Paris)RILPL2
WikiGenes196383
SOURCE (Princeton)RILPL2
Genetics Home Reference (NIH)RILPL2
Genomic and cartography
GoldenPath hg38 (UCSC)RILPL2  -     chr12:123415039-123436733 -  12q24.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RILPL2  -     12q24.31   [Description]    (hg19-Feb_2009)
EnsemblRILPL2 - 12q24.31 [CytoView hg19]  RILPL2 - 12q24.31 [CytoView hg38]
Mapping of homologs : NCBIRILPL2 [Mapview hg19]  RILPL2 [Mapview hg38]
OMIM614093   
Gene and transcription
Genbank (Entrez)AB085763 AK054942 AK056934 BC013042 BM556243
RefSeq transcript (Entrez)NM_145058
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RILPL2
Cluster EST : UnigeneHs.488173 [ NCBI ]
CGAP (NCI)Hs.488173
Gene ExpressionRILPL2 [ NCBI-GEO ]   RILPL2 [ EBI - ARRAY_EXPRESS ]   RILPL2 [ SEEK ]   RILPL2 [ MEM ]
Gene Expression Viewer (FireBrowse)RILPL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)196383
GTEX Portal (Tissue expression)RILPL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969X0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969X0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969X0
Splice isoforms : SwissVarQ969X0
PhosPhoSitePlusQ969X0
Domaine pattern : Prosite (Expaxy)RH1 (PS51776)    RH2 (PS51777)   
Domains : Interpro (EBI)RILP   
Domain families : Pfam (Sanger)RILP (PF11461)   
Domain families : Pfam (NCBI)pfam11461   
Conserved Domain (NCBI)RILPL2
DMDM Disease mutations196383
Blocks (Seattle)RILPL2
SuperfamilyQ969X0
Peptide AtlasQ969X0
HPRD10084
IPIIPI00056522   
Protein Interaction databases
DIP (DOE-UCLA)Q969X0
IntAct (EBI)Q969X0
BioGRIDRILPL2
STRING (EMBL)RILPL2
ZODIACRILPL2
Ontologies - Pathways
QuickGOQ969X0
Ontology : AmiGOepithelial cell morphogenesis  cytoplasm  centrosome  cytosol  cilium  membrane  small GTPase binding  ciliary basal body  identical protein binding  protein dimerization activity  dynein light intermediate chain binding  cilium assembly  extracellular exosome  protein transport from ciliary membrane to plasma membrane  
Ontology : EGO-EBIepithelial cell morphogenesis  cytoplasm  centrosome  cytosol  cilium  membrane  small GTPase binding  ciliary basal body  identical protein binding  protein dimerization activity  dynein light intermediate chain binding  cilium assembly  extracellular exosome  protein transport from ciliary membrane to plasma membrane  
NDEx NetworkRILPL2
Atlas of Cancer Signalling NetworkRILPL2
Wikipedia pathwaysRILPL2
Orthology - Evolution
OrthoDB196383
Phylogenetic Trees/Animal Genes : TreeFamRILPL2
HOVERGENQ969X0
HOGENOMQ969X0
Homologs : HomoloGeneRILPL2
Homology/Alignments : Family Browser (UCSC)RILPL2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRILPL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RILPL2
dbVarRILPL2
ClinVarRILPL2
1000_GenomesRILPL2 
Exome Variant ServerRILPL2
ExAC (Exome Aggregation Consortium)RILPL2 (select the gene name)
Genetic variants : HAPMAP196383
Genomic Variants (DGV)RILPL2 [DGVbeta]
DECIPHERRILPL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRILPL2 
Mutations
ICGC Data PortalRILPL2 
TCGA Data PortalRILPL2 
Broad Tumor PortalRILPL2
OASIS PortalRILPL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRILPL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRILPL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RILPL2
DgiDB (Drug Gene Interaction Database)RILPL2
DoCM (Curated mutations)RILPL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RILPL2 (select a term)
intoGenRILPL2
Cancer3DRILPL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614093   
Orphanet
MedgenRILPL2
Genetic Testing Registry RILPL2
NextProtQ969X0 [Medical]
TSGene196383
GENETestsRILPL2
Target ValidationRILPL2
Huge Navigator RILPL2 [HugePedia]
snp3D : Map Gene to Disease196383
BioCentury BCIQRILPL2
ClinGenRILPL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD196383
Chemical/Pharm GKB GenePA162401325
Clinical trialRILPL2
Miscellaneous
canSAR (ICR)RILPL2 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRILPL2
EVEXRILPL2
GoPubMedRILPL2
iHOPRILPL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:36:12 CEST 2017

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