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RIMBP3 (RIMS binding protein 3)

Identity

Alias_symbol (synonym)KIAA1666
RIMBP3.1
RIMBP3A
Other aliasRIM-BP3
RIM-BP3.1
RIM-BP3.A
HGNC (Hugo) RIMBP3
LocusID (NCBI) 85376
Atlas_Id 72646
Location 22q11.21  [Link to chromosome band 22q11]
Location_base_pair Starts at 18606127 and ends at 18611919 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RIMBP3   29344
Cards
Entrez_Gene (NCBI)RIMBP3  85376  RIMS binding protein 3
AliasesRIM-BP3; RIM-BP3.1; RIM-BP3.A; RIMBP3.1; 
RIMBP3A
GeneCards (Weizmann)RIMBP3
Ensembl hg19 (Hinxton)ENSG00000275793 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000275793 [Gene_View]  chr22:18606127-18611919 [Contig_View]  RIMBP3 [Vega]
ICGC DataPortalENSG00000275793
TCGA cBioPortalRIMBP3
AceView (NCBI)RIMBP3
Genatlas (Paris)RIMBP3
WikiGenes85376
SOURCE (Princeton)RIMBP3
Genetics Home Reference (NIH)RIMBP3
Genomic and cartography
GoldenPath hg38 (UCSC)RIMBP3  -     chr22:18606127-18611919 -  22q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RIMBP3  -     22q11.21   [Description]    (hg19-Feb_2009)
EnsemblRIMBP3 - 22q11.21 [CytoView hg19]  RIMBP3 - 22q11.21 [CytoView hg38]
Mapping of homologs : NCBIRIMBP3 [Mapview hg19]  RIMBP3 [Mapview hg38]
OMIM612699   
Gene and transcription
Genbank (Entrez)AB051453 AL117509 AL133030 BC035246 BC167855
RefSeq transcript (Entrez)NM_015672
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RIMBP3
Cluster EST : UnigeneHs.115429 [ NCBI ]
CGAP (NCI)Hs.115429
Alternative Splicing GalleryENSG00000275793
Gene ExpressionRIMBP3 [ NCBI-GEO ]   RIMBP3 [ EBI - ARRAY_EXPRESS ]   RIMBP3 [ SEEK ]   RIMBP3 [ MEM ]
Gene Expression Viewer (FireBrowse)RIMBP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85376
GTEX Portal (Tissue expression)RIMBP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UFD9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UFD9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UFD9
Splice isoforms : SwissVarQ9UFD9
PhosPhoSitePlusQ9UFD9
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)    SH3 (PS50002)   
Domains : Interpro (EBI)FN3_dom    Ig-like_fold    SH3_2    SH3_domain   
Domain families : Pfam (Sanger)SH3_2 (PF07653)    SH3_9 (PF14604)   
Domain families : Pfam (NCBI)pfam07653    pfam14604   
Domain families : Smart (EMBL)SH3 (SM00326)  
Conserved Domain (NCBI)RIMBP3
DMDM Disease mutations85376
Blocks (Seattle)RIMBP3
PDB (SRS)2EGE   
PDB (PDBSum)2EGE   
PDB (IMB)2EGE   
PDB (RSDB)2EGE   
Structural Biology KnowledgeBase2EGE   
SCOP (Structural Classification of Proteins)2EGE   
CATH (Classification of proteins structures)2EGE   
SuperfamilyQ9UFD9
Human Protein AtlasENSG00000275793
Peptide AtlasQ9UFD9
IPIIPI00740208   
Protein Interaction databases
DIP (DOE-UCLA)Q9UFD9
IntAct (EBI)Q9UFD9
FunCoupENSG00000275793
BioGRIDRIMBP3
STRING (EMBL)RIMBP3
ZODIACRIMBP3
Ontologies - Pathways
QuickGOQ9UFD9
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkRIMBP3
Atlas of Cancer Signalling NetworkRIMBP3
Wikipedia pathwaysRIMBP3
Orthology - Evolution
OrthoDB85376
GeneTree (enSembl)ENSG00000275793
Phylogenetic Trees/Animal Genes : TreeFamRIMBP3
HOVERGENQ9UFD9
HOGENOMQ9UFD9
Homologs : HomoloGeneRIMBP3
Homology/Alignments : Family Browser (UCSC)RIMBP3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRIMBP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RIMBP3
dbVarRIMBP3
ClinVarRIMBP3
1000_GenomesRIMBP3 
Exome Variant ServerRIMBP3
ExAC (Exome Aggregation Consortium)RIMBP3 (select the gene name)
Genetic variants : HAPMAP85376
Genomic Variants (DGV)RIMBP3 [DGVbeta]
DECIPHERRIMBP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRIMBP3 
Mutations
ICGC Data PortalRIMBP3 
TCGA Data PortalRIMBP3 
Broad Tumor PortalRIMBP3
OASIS PortalRIMBP3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRIMBP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RIMBP3
DgiDB (Drug Gene Interaction Database)RIMBP3
DoCM (Curated mutations)RIMBP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RIMBP3 (select a term)
intoGenRIMBP3
Cancer3DRIMBP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612699   
Orphanet
MedgenRIMBP3
Genetic Testing Registry RIMBP3
NextProtQ9UFD9 [Medical]
TSGene85376
GENETestsRIMBP3
Target ValidationRIMBP3
Huge Navigator RIMBP3 [HugePedia]
snp3D : Map Gene to Disease85376
BioCentury BCIQRIMBP3
ClinGenRIMBP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85376
Chemical/Pharm GKB GenePA162401326
Clinical trialRIMBP3
Miscellaneous
canSAR (ICR)RIMBP3 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRIMBP3
EVEXRIMBP3
GoPubMedRIMBP3
iHOPRIMBP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:38:43 CEST 2017

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