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RIMBP3B (RIMS binding protein 3B)

Identity

Other aliasRIM-BP3.2
RIM-BP3.B
RIMBP3.2
HGNC (Hugo) RIMBP3B
LocusID (NCBI) 440804
Atlas_Id 72647
Location 22q11.21  [Link to chromosome band 22q11]
Location_base_pair Starts at 21383751 and ends at 21389166 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RIMBP3B   33891
Cards
Entrez_Gene (NCBI)RIMBP3B  440804  RIMS binding protein 3B
AliasesRIM-BP3.2; RIM-BP3.B; RIMBP3.2
GeneCards (Weizmann)RIMBP3B
Ensembl hg19 (Hinxton)ENSG00000274600 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000274600 [Gene_View]  chr22:21383751-21389166 [Contig_View]  RIMBP3B [Vega]
ICGC DataPortalENSG00000274600
TCGA cBioPortalRIMBP3B
AceView (NCBI)RIMBP3B
Genatlas (Paris)RIMBP3B
WikiGenes440804
SOURCE (Princeton)RIMBP3B
Genetics Home Reference (NIH)RIMBP3B
Genomic and cartography
GoldenPath hg38 (UCSC)RIMBP3B  -     chr22:21383751-21389166 +  22q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RIMBP3B  -     22q11.21   [Description]    (hg19-Feb_2009)
EnsemblRIMBP3B - 22q11.21 [CytoView hg19]  RIMBP3B - 22q11.21 [CytoView hg38]
Mapping of homologs : NCBIRIMBP3B [Mapview hg19]  RIMBP3B [Mapview hg38]
OMIM612700   
Gene and transcription
Genbank (Entrez)BX112696 DB455171
RefSeq transcript (Entrez)NM_001128635
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RIMBP3B
Cluster EST : UnigeneHs.568257 [ NCBI ]
CGAP (NCI)Hs.568257
Alternative Splicing GalleryENSG00000274600
Gene ExpressionRIMBP3B [ NCBI-GEO ]   RIMBP3B [ EBI - ARRAY_EXPRESS ]   RIMBP3B [ SEEK ]   RIMBP3B [ MEM ]
Gene Expression Viewer (FireBrowse)RIMBP3B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440804
GTEX Portal (Tissue expression)RIMBP3B
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NNM3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NNM3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NNM3
Splice isoforms : SwissVarA6NNM3
PhosPhoSitePlusA6NNM3
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)    SH3 (PS50002)   
Domains : Interpro (EBI)FN3_dom    Ig-like_fold    SH3_2    SH3_domain   
Domain families : Pfam (Sanger)SH3_2 (PF07653)    SH3_9 (PF14604)   
Domain families : Pfam (NCBI)pfam07653    pfam14604   
Domain families : Smart (EMBL)FN3 (SM00060)  SH3 (SM00326)  
Conserved Domain (NCBI)RIMBP3B
DMDM Disease mutations440804
Blocks (Seattle)RIMBP3B
SuperfamilyA6NNM3
Human Protein AtlasENSG00000274600
Peptide AtlasA6NNM3
IPIIPI00033009   
Protein Interaction databases
DIP (DOE-UCLA)A6NNM3
IntAct (EBI)A6NNM3
FunCoupENSG00000274600
BioGRIDRIMBP3B
STRING (EMBL)RIMBP3B
ZODIACRIMBP3B
Ontologies - Pathways
QuickGOA6NNM3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkRIMBP3B
Atlas of Cancer Signalling NetworkRIMBP3B
Wikipedia pathwaysRIMBP3B
Orthology - Evolution
OrthoDB440804
GeneTree (enSembl)ENSG00000274600
Phylogenetic Trees/Animal Genes : TreeFamRIMBP3B
HOVERGENA6NNM3
HOGENOMA6NNM3
Homologs : HomoloGeneRIMBP3B
Homology/Alignments : Family Browser (UCSC)RIMBP3B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRIMBP3B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RIMBP3B
dbVarRIMBP3B
ClinVarRIMBP3B
1000_GenomesRIMBP3B 
Exome Variant ServerRIMBP3B
ExAC (Exome Aggregation Consortium)RIMBP3B (select the gene name)
Genetic variants : HAPMAP440804
Genomic Variants (DGV)RIMBP3B [DGVbeta]
DECIPHERRIMBP3B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRIMBP3B 
Mutations
ICGC Data PortalRIMBP3B 
TCGA Data PortalRIMBP3B 
Broad Tumor PortalRIMBP3B
OASIS PortalRIMBP3B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRIMBP3B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRIMBP3B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RIMBP3B
DgiDB (Drug Gene Interaction Database)RIMBP3B
DoCM (Curated mutations)RIMBP3B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RIMBP3B (select a term)
intoGenRIMBP3B
Cancer3DRIMBP3B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612700   
Orphanet
MedgenRIMBP3B
Genetic Testing Registry RIMBP3B
NextProtA6NNM3 [Medical]
TSGene440804
GENETestsRIMBP3B
Target ValidationRIMBP3B
Huge Navigator RIMBP3B [HugePedia]
snp3D : Map Gene to Disease440804
BioCentury BCIQRIMBP3B
ClinGenRIMBP3B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440804
Chemical/Pharm GKB GenePA162401333
Clinical trialRIMBP3B
Miscellaneous
canSAR (ICR)RIMBP3B (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRIMBP3B
EVEXRIMBP3B
GoPubMedRIMBP3B
iHOPRIMBP3B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:36:12 CEST 2017

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