Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RIMBP3C (RIMS binding protein 3C)

Identity

Other aliasRIM-BP3.3
RIMBP3.3
HGNC (Hugo) RIMBP3C
LocusID (NCBI) 150221
Atlas_Id 72648
Location 22q11.21  [Link to chromosome band 22q11]
Location_base_pair Starts at 21383374 and ends at 21389166 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RIMBP3C   33892
Cards
Entrez_Gene (NCBI)RIMBP3C  150221  RIMS binding protein 3C
AliasesRIM-BP3.3; RIMBP3.3
GeneCards (Weizmann)RIMBP3C
Ensembl hg19 (Hinxton)ENSG00000183246 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183246 [Gene_View]  chr22:21383374-21389166 [Contig_View]  RIMBP3C [Vega]
ICGC DataPortalENSG00000183246
TCGA cBioPortalRIMBP3C
AceView (NCBI)RIMBP3C
Genatlas (Paris)RIMBP3C
WikiGenes150221
SOURCE (Princeton)RIMBP3C
Genetics Home Reference (NIH)RIMBP3C
Genomic and cartography
GoldenPath hg38 (UCSC)RIMBP3C  -     chr22:21383374-21389166 +  22q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RIMBP3C  -     22q11.21   [Description]    (hg19-Feb_2009)
EnsemblRIMBP3C - 22q11.21 [CytoView hg19]  RIMBP3C - 22q11.21 [CytoView hg38]
Mapping of homologs : NCBIRIMBP3C [Mapview hg19]  RIMBP3C [Mapview hg38]
OMIM612701   
Gene and transcription
Genbank (Entrez)BF513974 BU738457
RefSeq transcript (Entrez)NM_001128633
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RIMBP3C
Cluster EST : UnigeneHs.447643 [ NCBI ]
CGAP (NCI)Hs.447643
Alternative Splicing GalleryENSG00000183246
Gene ExpressionRIMBP3C [ NCBI-GEO ]   RIMBP3C [ EBI - ARRAY_EXPRESS ]   RIMBP3C [ SEEK ]   RIMBP3C [ MEM ]
Gene Expression Viewer (FireBrowse)RIMBP3C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)150221
GTEX Portal (Tissue expression)RIMBP3C
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NJZ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NJZ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NJZ7
Splice isoforms : SwissVarA6NJZ7
PhosPhoSitePlusA6NJZ7
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)    SH3 (PS50002)   
Domains : Interpro (EBI)FN3_dom    Ig-like_fold    SH3_2    SH3_domain   
Domain families : Pfam (Sanger)SH3_2 (PF07653)    SH3_9 (PF14604)   
Domain families : Pfam (NCBI)pfam07653    pfam14604   
Domain families : Smart (EMBL)FN3 (SM00060)  SH3 (SM00326)  
Conserved Domain (NCBI)RIMBP3C
DMDM Disease mutations150221
Blocks (Seattle)RIMBP3C
SuperfamilyA6NJZ7
Human Protein AtlasENSG00000183246
Peptide AtlasA6NJZ7
IPIIPI00719269   
Protein Interaction databases
DIP (DOE-UCLA)A6NJZ7
IntAct (EBI)A6NJZ7
FunCoupENSG00000183246
BioGRIDRIMBP3C
STRING (EMBL)RIMBP3C
ZODIACRIMBP3C
Ontologies - Pathways
QuickGOA6NJZ7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkRIMBP3C
Atlas of Cancer Signalling NetworkRIMBP3C
Wikipedia pathwaysRIMBP3C
Orthology - Evolution
OrthoDB150221
GeneTree (enSembl)ENSG00000183246
Phylogenetic Trees/Animal Genes : TreeFamRIMBP3C
HOVERGENA6NJZ7
HOGENOMA6NJZ7
Homologs : HomoloGeneRIMBP3C
Homology/Alignments : Family Browser (UCSC)RIMBP3C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRIMBP3C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RIMBP3C
dbVarRIMBP3C
ClinVarRIMBP3C
1000_GenomesRIMBP3C 
Exome Variant ServerRIMBP3C
ExAC (Exome Aggregation Consortium)RIMBP3C (select the gene name)
Genetic variants : HAPMAP150221
Genomic Variants (DGV)RIMBP3C [DGVbeta]
DECIPHERRIMBP3C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRIMBP3C 
Mutations
ICGC Data PortalRIMBP3C 
TCGA Data PortalRIMBP3C 
Broad Tumor PortalRIMBP3C
OASIS PortalRIMBP3C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRIMBP3C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRIMBP3C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RIMBP3C
DgiDB (Drug Gene Interaction Database)RIMBP3C
DoCM (Curated mutations)RIMBP3C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RIMBP3C (select a term)
intoGenRIMBP3C
Cancer3DRIMBP3C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612701   
Orphanet
MedgenRIMBP3C
Genetic Testing Registry RIMBP3C
NextProtA6NJZ7 [Medical]
TSGene150221
GENETestsRIMBP3C
Target ValidationRIMBP3C
Huge Navigator RIMBP3C [HugePedia]
snp3D : Map Gene to Disease150221
BioCentury BCIQRIMBP3C
ClinGenRIMBP3C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD150221
Chemical/Pharm GKB GenePA162401340
Clinical trialRIMBP3C
Miscellaneous
canSAR (ICR)RIMBP3C (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRIMBP3C
EVEXRIMBP3C
GoPubMedRIMBP3C
iHOPRIMBP3C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:36:12 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.