Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RIMKLA (ribosomal modification protein rimK like family member A)

Identity

Alias_namesFAM80A
family with sequence similarity 80, member A
Alias_symbol (synonym)MGC47816
RP11-157D18.1
NAAGS-II
Other aliasNAAGS
HGNC (Hugo) RIMKLA
LocusID (NCBI) 284716
Atlas_Id 72649
Location 1p34.2  [Link to chromosome band 1p34]
Location_base_pair Starts at 42380797 and ends at 42424229 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RIMKLA (1p34.2) / C5AR1 (19q13.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RIMKLA   28725
Cards
Entrez_Gene (NCBI)RIMKLA  284716  ribosomal modification protein rimK like family member A
AliasesFAM80A; NAAGS; NAAGS-II
GeneCards (Weizmann)RIMKLA
Ensembl hg19 (Hinxton)ENSG00000177181 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177181 [Gene_View]  chr1:42380797-42424229 [Contig_View]  RIMKLA [Vega]
ICGC DataPortalENSG00000177181
TCGA cBioPortalRIMKLA
AceView (NCBI)RIMKLA
Genatlas (Paris)RIMKLA
WikiGenes284716
SOURCE (Princeton)RIMKLA
Genetics Home Reference (NIH)RIMKLA
Genomic and cartography
GoldenPath hg38 (UCSC)RIMKLA  -     chr1:42380797-42424229 +  1p34.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RIMKLA  -     1p34.2   [Description]    (hg19-Feb_2009)
EnsemblRIMKLA - 1p34.2 [CytoView hg19]  RIMKLA - 1p34.2 [CytoView hg38]
Mapping of homologs : NCBIRIMKLA [Mapview hg19]  RIMKLA [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC039737 BX094947 DR000262 HQ448023
RefSeq transcript (Entrez)NM_173642
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RIMKLA
Cluster EST : UnigeneHs.420244 [ NCBI ]
CGAP (NCI)Hs.420244
Alternative Splicing GalleryENSG00000177181
Gene ExpressionRIMKLA [ NCBI-GEO ]   RIMKLA [ EBI - ARRAY_EXPRESS ]   RIMKLA [ SEEK ]   RIMKLA [ MEM ]
Gene Expression Viewer (FireBrowse)RIMKLA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284716
GTEX Portal (Tissue expression)RIMKLA
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IXN7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IXN7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IXN7
Splice isoforms : SwissVarQ8IXN7
PhosPhoSitePlusQ8IXN7
Domaine pattern : Prosite (Expaxy)ATP_GRASP (PS50975)   
Domains : Interpro (EBI)ATP-grasp    ATP-grasp_RimK-type    ATP_grasp_subdomain_1    ATP_grasp_subdomain_2    PreATP-grasp_dom    RpS6_RimK/Lys_biosynth_LsyX   
Domain families : Pfam (Sanger)RimK (PF08443)   
Domain families : Pfam (NCBI)pfam08443   
Conserved Domain (NCBI)RIMKLA
DMDM Disease mutations284716
Blocks (Seattle)RIMKLA
SuperfamilyQ8IXN7
Human Protein AtlasENSG00000177181
Peptide AtlasQ8IXN7
HPRD14656
IPIIPI00252643   IPI00644188   
Protein Interaction databases
DIP (DOE-UCLA)Q8IXN7
IntAct (EBI)Q8IXN7
FunCoupENSG00000177181
BioGRIDRIMKLA
STRING (EMBL)RIMKLA
ZODIACRIMKLA
Ontologies - Pathways
QuickGOQ8IXN7
Ontology : AmiGOATP binding  cytoplasm  cellular protein modification process  metal ion binding  N-acetyl-L-aspartate-L-glutamate ligase activity  N-acetyl-L-aspartate-L-glutamate ligase activity  
Ontology : EGO-EBIATP binding  cytoplasm  cellular protein modification process  metal ion binding  N-acetyl-L-aspartate-L-glutamate ligase activity  N-acetyl-L-aspartate-L-glutamate ligase activity  
NDEx NetworkRIMKLA
Atlas of Cancer Signalling NetworkRIMKLA
Wikipedia pathwaysRIMKLA
Orthology - Evolution
OrthoDB284716
GeneTree (enSembl)ENSG00000177181
Phylogenetic Trees/Animal Genes : TreeFamRIMKLA
HOVERGENQ8IXN7
HOGENOMQ8IXN7
Homologs : HomoloGeneRIMKLA
Homology/Alignments : Family Browser (UCSC)RIMKLA
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRIMKLA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RIMKLA
dbVarRIMKLA
ClinVarRIMKLA
1000_GenomesRIMKLA 
Exome Variant ServerRIMKLA
ExAC (Exome Aggregation Consortium)RIMKLA (select the gene name)
Genetic variants : HAPMAP284716
Genomic Variants (DGV)RIMKLA [DGVbeta]
DECIPHERRIMKLA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRIMKLA 
Mutations
ICGC Data PortalRIMKLA 
TCGA Data PortalRIMKLA 
Broad Tumor PortalRIMKLA
OASIS PortalRIMKLA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRIMKLA  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRIMKLA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RIMKLA
DgiDB (Drug Gene Interaction Database)RIMKLA
DoCM (Curated mutations)RIMKLA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RIMKLA (select a term)
intoGenRIMKLA
Cancer3DRIMKLA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRIMKLA
Genetic Testing Registry RIMKLA
NextProtQ8IXN7 [Medical]
TSGene284716
GENETestsRIMKLA
Target ValidationRIMKLA
Huge Navigator RIMKLA [HugePedia]
snp3D : Map Gene to Disease284716
BioCentury BCIQRIMKLA
ClinGenRIMKLA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284716
Chemical/Pharm GKB GenePA164725339
Clinical trialRIMKLA
Miscellaneous
canSAR (ICR)RIMKLA (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRIMKLA
EVEXRIMKLA
GoPubMedRIMKLA
iHOPRIMKLA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:38:43 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.