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RIMKLB (ribosomal modification protein rimK-like family member B)

Identity

Alias_namesFAM80B
family with sequence similarity 80, member B
Alias_symbol (synonym)KIAA1238
NAAGS
NAAGS-I
Other alias
HGNC (Hugo) RIMKLB
LocusID (NCBI) 57494
Atlas_Id 72650
Location 12p13.31  [Link to chromosome band 12p13]
Location_base_pair Starts at 8850496 and ends at 8929787 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RIMKLB (12p13.31) / DNAJC27-AS1 (2p23.3)RIMKLB (12p13.31) / ITFG2 (12p13.33)RIMKLB (12p13.31) / PIP4K2A (10p12.2)
RIMKLB ITFG2RIMKLB PIP4K2A

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RIMKLB   29228
Cards
Entrez_Gene (NCBI)RIMKLB  57494  ribosomal modification protein rimK-like family member B
AliasesFAM80B; NAAGS; NAAGS-I
GeneCards (Weizmann)RIMKLB
Ensembl hg19 (Hinxton)ENSG00000166532 [Gene_View]  chr12:8850496-8929787 [Contig_View]  RIMKLB [Vega]
Ensembl hg38 (Hinxton)ENSG00000166532 [Gene_View]  chr12:8850496-8929787 [Contig_View]  RIMKLB [Vega]
ICGC DataPortalENSG00000166532
TCGA cBioPortalRIMKLB
AceView (NCBI)RIMKLB
Genatlas (Paris)RIMKLB
WikiGenes57494
SOURCE (Princeton)RIMKLB
Genetics Home Reference (NIH)RIMKLB
Genomic and cartography
GoldenPath hg19 (UCSC)RIMKLB  -     chr12:8850496-8929787 +  12p13.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RIMKLB  -     12p13.31   [Description]    (hg38-Dec_2013)
EnsemblRIMKLB - 12p13.31 [CytoView hg19]  RIMKLB - 12p13.31 [CytoView hg38]
Mapping of homologs : NCBIRIMKLB [Mapview hg19]  RIMKLB [Mapview hg38]
OMIM614054   
Gene and transcription
Genbank (Entrez)AA431479 AB033064 AI244709 AK302847 AL137567
RefSeq transcript (Entrez)NM_001297776 NM_020734
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_009714 NW_004929383
Consensus coding sequences : CCDS (NCBI)RIMKLB
Cluster EST : UnigeneHs.504670 [ NCBI ]
CGAP (NCI)Hs.504670
Alternative Splicing GalleryENSG00000166532
Gene ExpressionRIMKLB [ NCBI-GEO ]   RIMKLB [ EBI - ARRAY_EXPRESS ]   RIMKLB [ SEEK ]   RIMKLB [ MEM ]
Gene Expression Viewer (FireBrowse)RIMKLB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57494
GTEX Portal (Tissue expression)RIMKLB
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULI2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9ULI2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9ULI2
Splice isoforms : SwissVarQ9ULI2
Catalytic activity : Enzyme6.3.1.17 [ Enzyme-Expasy ]   6.3.1.176.3.1.17 [ IntEnz-EBI ]   6.3.1.17 [ BRENDA ]   6.3.1.17 [ KEGG ]   
PhosPhoSitePlusQ9ULI2
Domaine pattern : Prosite (Expaxy)ATP_GRASP (PS50975)   
Domains : Interpro (EBI)ATP-grasp    ATP-grasp_RimK-type    ATP_grasp_subdomain_1    ATP_grasp_subdomain_2    PreATP-grasp_dom    RpS6_RimK/Lys_biosynth_LsyX   
Domain families : Pfam (Sanger)RimK (PF08443)   
Domain families : Pfam (NCBI)pfam08443   
Conserved Domain (NCBI)RIMKLB
DMDM Disease mutations57494
Blocks (Seattle)RIMKLB
SuperfamilyQ9ULI2
Human Protein AtlasENSG00000166532
Peptide AtlasQ9ULI2
HPRD13844
IPIIPI00008121   IPI00166734   IPI01014289   IPI01011125   IPI01011728   
Protein Interaction databases
DIP (DOE-UCLA)Q9ULI2
IntAct (EBI)Q9ULI2
FunCoupENSG00000166532
BioGRIDRIMKLB
STRING (EMBL)RIMKLB
ZODIACRIMKLB
Ontologies - Pathways
QuickGOQ9ULI2
Ontology : AmiGOATP binding  cytoplasm  cellular protein modification process  metal ion binding  N-acetyl-L-aspartate-L-glutamate ligase activity  citrate-L-glutamate ligase activity  
Ontology : EGO-EBIATP binding  cytoplasm  cellular protein modification process  metal ion binding  N-acetyl-L-aspartate-L-glutamate ligase activity  citrate-L-glutamate ligase activity  
NDEx NetworkRIMKLB
Atlas of Cancer Signalling NetworkRIMKLB
Wikipedia pathwaysRIMKLB
Orthology - Evolution
OrthoDB57494
GeneTree (enSembl)ENSG00000166532
Phylogenetic Trees/Animal Genes : TreeFamRIMKLB
HOVERGENQ9ULI2
HOGENOMQ9ULI2
Homologs : HomoloGeneRIMKLB
Homology/Alignments : Family Browser (UCSC)RIMKLB
Gene fusions - Rearrangements
Fusion: TCGARIMKLB ITFG2
Fusion: TCGARIMKLB PIP4K2A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRIMKLB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RIMKLB
dbVarRIMKLB
ClinVarRIMKLB
1000_GenomesRIMKLB 
Exome Variant ServerRIMKLB
ExAC (Exome Aggregation Consortium)RIMKLB (select the gene name)
Genetic variants : HAPMAP57494
Genomic Variants (DGV)RIMKLB [DGVbeta]
DECIPHER (Syndromes)12:8850496-8929787  ENSG00000166532
CONAN: Copy Number AnalysisRIMKLB 
Mutations
ICGC Data PortalRIMKLB 
TCGA Data PortalRIMKLB 
Broad Tumor PortalRIMKLB
OASIS PortalRIMKLB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRIMKLB  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRIMKLB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RIMKLB
DgiDB (Drug Gene Interaction Database)RIMKLB
DoCM (Curated mutations)RIMKLB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RIMKLB (select a term)
intoGenRIMKLB
Cancer3DRIMKLB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614054   
Orphanet
MedgenRIMKLB
Genetic Testing Registry RIMKLB
NextProtQ9ULI2 [Medical]
TSGene57494
GENETestsRIMKLB
Huge Navigator RIMKLB [HugePedia]
snp3D : Map Gene to Disease57494
BioCentury BCIQRIMKLB
ClinGenRIMKLB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57494
Chemical/Pharm GKB GenePA164725354
Clinical trialRIMKLB
Miscellaneous
canSAR (ICR)RIMKLB (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRIMKLB
EVEXRIMKLB
GoPubMedRIMKLB
iHOPRIMKLB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:41:07 CET 2017

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