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RIMS3 (regulating synaptic membrane exocytosis 3)

Identity

Alias_symbol (synonym)RIM3
NIM3
Other alias
HGNC (Hugo) RIMS3
LocusID (NCBI) 9783
Atlas_Id 54583
Location 1p34.2  [Link to chromosome band 1p34]
Location_base_pair Starts at 40620680 and ends at 40665652 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BCL2L1 (20q11.21) / RIMS3 (1p34.2)RIMS3 (1p34.2) / CCT7 (2p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Small Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)RIMS3   21292
Cards
Entrez_Gene (NCBI)RIMS3  9783  regulating synaptic membrane exocytosis 3
AliasesNIM3; RIM3
GeneCards (Weizmann)RIMS3
Ensembl hg19 (Hinxton)ENSG00000117016 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000117016 [Gene_View]  chr1:40620680-40665652 [Contig_View]  RIMS3 [Vega]
ICGC DataPortalENSG00000117016
TCGA cBioPortalRIMS3
AceView (NCBI)RIMS3
Genatlas (Paris)RIMS3
WikiGenes9783
SOURCE (Princeton)RIMS3
Genetics Home Reference (NIH)RIMS3
Genomic and cartography
GoldenPath hg38 (UCSC)RIMS3  -     chr1:40620680-40665652 -  1p34.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RIMS3  -     1p34.2   [Description]    (hg19-Feb_2009)
EnsemblRIMS3 - 1p34.2 [CytoView hg19]  RIMS3 - 1p34.2 [CytoView hg38]
Mapping of homologs : NCBIRIMS3 [Mapview hg19]  RIMS3 [Mapview hg38]
OMIM611600   
Gene and transcription
Genbank (Entrez)AY326956 BC003103 CK005853 D87074 EU446752
RefSeq transcript (Entrez)NM_014747
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RIMS3
Cluster EST : UnigeneHs.654808 [ NCBI ]
CGAP (NCI)Hs.654808
Alternative Splicing GalleryENSG00000117016
Gene ExpressionRIMS3 [ NCBI-GEO ]   RIMS3 [ EBI - ARRAY_EXPRESS ]   RIMS3 [ SEEK ]   RIMS3 [ MEM ]
Gene Expression Viewer (FireBrowse)RIMS3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9783
GTEX Portal (Tissue expression)RIMS3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJD0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UJD0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UJD0
Splice isoforms : SwissVarQ9UJD0
PhosPhoSitePlusQ9UJD0
Domaine pattern : Prosite (Expaxy)C2 (PS50004)   
Domains : Interpro (EBI)C2_dom   
Domain families : Pfam (Sanger)C2 (PF00168)   
Domain families : Pfam (NCBI)pfam00168   
Domain families : Smart (EMBL)C2 (SM00239)  
Conserved Domain (NCBI)RIMS3
DMDM Disease mutations9783
Blocks (Seattle)RIMS3
SuperfamilyQ9UJD0
Human Protein AtlasENSG00000117016
Peptide AtlasQ9UJD0
HPRD17976
IPIIPI00006094   
Protein Interaction databases
DIP (DOE-UCLA)Q9UJD0
IntAct (EBI)Q9UJD0
FunCoupENSG00000117016
BioGRIDRIMS3
STRING (EMBL)RIMS3
ZODIACRIMS3
Ontologies - Pathways
QuickGOQ9UJD0
Ontology : AmiGOcalcium ion regulated exocytosis  cell junction  regulation of membrane potential  regulation of membrane potential  ion channel binding  ion channel binding  presynaptic active zone  calcium ion-regulated exocytosis of neurotransmitter  regulation of synaptic vesicle exocytosis  regulation of synaptic vesicle exocytosis  
Ontology : EGO-EBIcalcium ion regulated exocytosis  cell junction  regulation of membrane potential  regulation of membrane potential  ion channel binding  ion channel binding  presynaptic active zone  calcium ion-regulated exocytosis of neurotransmitter  regulation of synaptic vesicle exocytosis  regulation of synaptic vesicle exocytosis  
NDEx NetworkRIMS3
Atlas of Cancer Signalling NetworkRIMS3
Wikipedia pathwaysRIMS3
Orthology - Evolution
OrthoDB9783
GeneTree (enSembl)ENSG00000117016
Phylogenetic Trees/Animal Genes : TreeFamRIMS3
HOVERGENQ9UJD0
HOGENOMQ9UJD0
Homologs : HomoloGeneRIMS3
Homology/Alignments : Family Browser (UCSC)RIMS3
Gene fusions - Rearrangements
Fusion : MitelmanBCL2L1/RIMS3 [20q11.21/1p34.2]  [t(1;20)(p34;q11)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRIMS3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RIMS3
dbVarRIMS3
ClinVarRIMS3
1000_GenomesRIMS3 
Exome Variant ServerRIMS3
ExAC (Exome Aggregation Consortium)RIMS3 (select the gene name)
Genetic variants : HAPMAP9783
Genomic Variants (DGV)RIMS3 [DGVbeta]
DECIPHERRIMS3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRIMS3 
Mutations
ICGC Data PortalRIMS3 
TCGA Data PortalRIMS3 
Broad Tumor PortalRIMS3
OASIS PortalRIMS3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRIMS3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRIMS3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RIMS3
DgiDB (Drug Gene Interaction Database)RIMS3
DoCM (Curated mutations)RIMS3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RIMS3 (select a term)
intoGenRIMS3
Cancer3DRIMS3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611600   
Orphanet
MedgenRIMS3
Genetic Testing Registry RIMS3
NextProtQ9UJD0 [Medical]
TSGene9783
GENETestsRIMS3
Target ValidationRIMS3
Huge Navigator RIMS3 [HugePedia]
snp3D : Map Gene to Disease9783
BioCentury BCIQRIMS3
ClinGenRIMS3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9783
Chemical/Pharm GKB GenePA134980870
Clinical trialRIMS3
Miscellaneous
canSAR (ICR)RIMS3 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRIMS3
EVEXRIMS3
GoPubMedRIMS3
iHOPRIMS3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:28:51 CEST 2017

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