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RIMS4 (regulating synaptic membrane exocytosis 4)

Identity

Alias (NCBI)C20orf190
RIM 4
RIM-4
RIM4
RIM4-gamma
RIM4gamma
HGNC (Hugo) RIMS4
HGNC Alias symbdJ781B1.3
HGNC Previous nameC20orf190
HGNC Previous namechromosome 20 open reading frame 190
LocusID (NCBI) 140730
Atlas_Id 72651
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 44751808 and ends at 44810546 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RIMS4 (20q13.12) / AKAP10 (17p11.2)UBR5 (8q22.3) / RIMS4 (20q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RIMS4   16183
Cards
Entrez_Gene (NCBI)RIMS4    regulating synaptic membrane exocytosis 4
AliasesC20orf190; RIM; RIM-4; RIM4; 
RIM4-gamma; RIM4gamma
GeneCards (Weizmann)RIMS4
Ensembl hg19 (Hinxton)ENSG00000101098 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101098 [Gene_View]  ENSG00000101098 [Sequence]  chr20:44751808-44810546 [Contig_View]  RIMS4 [Vega]
ICGC DataPortalENSG00000101098
TCGA cBioPortalRIMS4
AceView (NCBI)RIMS4
Genatlas (Paris)RIMS4
SOURCE (Princeton)RIMS4
Genetics Home Reference (NIH)RIMS4
Genomic and cartography
GoldenPath hg38 (UCSC)RIMS4  -     chr20:44751808-44810546 -  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RIMS4  -     20q13.12   [Description]    (hg19-Feb_2009)
GoldenPathRIMS4 - 20q13.12 [CytoView hg19]  RIMS4 - 20q13.12 [CytoView hg38]
ImmunoBaseENSG00000101098
Genome Data Viewer NCBIRIMS4 [Mapview hg19]  
OMIM611601   
Gene and transcription
Genbank (Entrez)AK055698 AK095716 AK124626 AK126807 AY326954
RefSeq transcript (Entrez)NM_001205317 NM_182970
Consensus coding sequences : CCDS (NCBI)RIMS4
Gene ExpressionRIMS4 [ NCBI-GEO ]   RIMS4 [ EBI - ARRAY_EXPRESS ]   RIMS4 [ SEEK ]   RIMS4 [ MEM ]
Gene Expression Viewer (FireBrowse)RIMS4 [ Firebrowse - Broad ]
GenevisibleExpression of RIMS4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140730
GTEX Portal (Tissue expression)RIMS4
Human Protein AtlasENSG00000101098-RIMS4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H426   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H426  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H426
PhosPhoSitePlusQ9H426
Domaine pattern : Prosite (Expaxy)C2 (PS50004)   
Domains : Interpro (EBI)C2_dom    C2_domain_sf    Rim-like   
Domain families : Pfam (Sanger)C2 (PF00168)   
Domain families : Pfam (NCBI)pfam00168   
Domain families : Smart (EMBL)C2 (SM00239)  
Conserved Domain (NCBI)RIMS4
SuperfamilyQ9H426
AlphaFold pdb e-kbQ9H426   
Human Protein Atlas [tissue]ENSG00000101098-RIMS4 [tissue]
HPRD17977
Protein Interaction databases
DIP (DOE-UCLA)Q9H426
IntAct (EBI)Q9H426
BioGRIDRIMS4
STRING (EMBL)RIMS4
ZODIACRIMS4
Ontologies - Pathways
QuickGOQ9H426
Ontology : AmiGOprotein binding  neurotransmitter transport  exocytosis  small GTPase binding  regulation of membrane potential  ion channel binding  presynaptic active zone  synaptic membrane  regulation of synaptic vesicle exocytosis  
Ontology : EGO-EBIprotein binding  neurotransmitter transport  exocytosis  small GTPase binding  regulation of membrane potential  ion channel binding  presynaptic active zone  synaptic membrane  regulation of synaptic vesicle exocytosis  
NDEx NetworkRIMS4
Atlas of Cancer Signalling NetworkRIMS4
Wikipedia pathwaysRIMS4
Orthology - Evolution
OrthoDB140730
GeneTree (enSembl)ENSG00000101098
Phylogenetic Trees/Animal Genes : TreeFamRIMS4
Homologs : HomoloGeneRIMS4
Homology/Alignments : Family Browser (UCSC)RIMS4
Gene fusions - Rearrangements
Fusion : QuiverRIMS4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRIMS4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RIMS4
dbVarRIMS4
ClinVarRIMS4
MonarchRIMS4
1000_GenomesRIMS4 
Exome Variant ServerRIMS4
GNOMAD BrowserENSG00000101098
Varsome BrowserRIMS4
ACMGRIMS4 variants
VarityQ9H426
Genomic Variants (DGV)RIMS4 [DGVbeta]
DECIPHERRIMS4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRIMS4 
Mutations
ICGC Data PortalRIMS4 
TCGA Data PortalRIMS4 
Broad Tumor PortalRIMS4
OASIS PortalRIMS4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRIMS4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRIMS4
Mutations and Diseases : HGMDRIMS4
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRIMS4
DgiDB (Drug Gene Interaction Database)RIMS4
DoCM (Curated mutations)RIMS4
CIViC (Clinical Interpretations of Variants in Cancer)RIMS4
Cancer3DRIMS4
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611601   
Orphanet
DisGeNETRIMS4
MedgenRIMS4
Genetic Testing Registry RIMS4
NextProtQ9H426 [Medical]
GENETestsRIMS4
Target ValidationRIMS4
Huge Navigator RIMS4 [HugePedia]
ClinGenRIMS4
Clinical trials, drugs, therapy
MyCancerGenomeRIMS4
Protein Interactions : CTDRIMS4
Pharm GKB GenePA25733
PharosQ9H426
Clinical trialRIMS4
Miscellaneous
canSAR (ICR)RIMS4
HarmonizomeRIMS4
DataMed IndexRIMS4
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRIMS4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:18:27 CEST 2021

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