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RIMS4 (regulating synaptic membrane exocytosis 4)

Identity

Alias_namesC20orf190
chromosome 20 open reading frame 190
Alias_symbol (synonym)dJ781B1.3
Other aliasRIM 4
RIM-4
RIM4
RIM4-gamma
RIM4gamma
HGNC (Hugo) RIMS4
LocusID (NCBI) 140730
Atlas_Id 72651
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 44751804 and ends at 44810338 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RIMS4 (20q13.12) / AKAP10 (17p11.2)UBR5 (8q22.3) / RIMS4 (20q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RIMS4   16183
Cards
Entrez_Gene (NCBI)RIMS4  140730  regulating synaptic membrane exocytosis 4
AliasesC20orf190; RIM; RIM-4; RIM4; 
RIM4-gamma; RIM4gamma
GeneCards (Weizmann)RIMS4
Ensembl hg19 (Hinxton)ENSG00000101098 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101098 [Gene_View]  chr20:44751804-44810338 [Contig_View]  RIMS4 [Vega]
ICGC DataPortalENSG00000101098
TCGA cBioPortalRIMS4
AceView (NCBI)RIMS4
Genatlas (Paris)RIMS4
WikiGenes140730
SOURCE (Princeton)RIMS4
Genetics Home Reference (NIH)RIMS4
Genomic and cartography
GoldenPath hg38 (UCSC)RIMS4  -     chr20:44751804-44810338 -  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RIMS4  -     20q13.12   [Description]    (hg19-Feb_2009)
EnsemblRIMS4 - 20q13.12 [CytoView hg19]  RIMS4 - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBIRIMS4 [Mapview hg19]  RIMS4 [Mapview hg38]
OMIM611601   
Gene and transcription
Genbank (Entrez)AK055698 AK095716 AK124626 AK126807 AY326954
RefSeq transcript (Entrez)NM_001205317 NM_182970
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RIMS4
Cluster EST : UnigeneHs.517065 [ NCBI ]
CGAP (NCI)Hs.517065
Alternative Splicing GalleryENSG00000101098
Gene ExpressionRIMS4 [ NCBI-GEO ]   RIMS4 [ EBI - ARRAY_EXPRESS ]   RIMS4 [ SEEK ]   RIMS4 [ MEM ]
Gene Expression Viewer (FireBrowse)RIMS4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140730
GTEX Portal (Tissue expression)RIMS4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H426   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H426  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H426
Splice isoforms : SwissVarQ9H426
PhosPhoSitePlusQ9H426
Domaine pattern : Prosite (Expaxy)C2 (PS50004)   
Domains : Interpro (EBI)C2_dom   
Domain families : Pfam (Sanger)C2 (PF00168)   
Domain families : Pfam (NCBI)pfam00168   
Domain families : Smart (EMBL)C2 (SM00239)  
Conserved Domain (NCBI)RIMS4
DMDM Disease mutations140730
Blocks (Seattle)RIMS4
SuperfamilyQ9H426
Human Protein AtlasENSG00000101098
Peptide AtlasQ9H426
HPRD17977
IPIIPI00301500   IPI01011867   
Protein Interaction databases
DIP (DOE-UCLA)Q9H426
IntAct (EBI)Q9H426
FunCoupENSG00000101098
BioGRIDRIMS4
STRING (EMBL)RIMS4
ZODIACRIMS4
Ontologies - Pathways
QuickGOQ9H426
Ontology : AmiGOcell junction  regulation of membrane potential  regulation of membrane potential  ion channel binding  ion channel binding  presynaptic active zone  calcium ion-regulated exocytosis of neurotransmitter  synaptic membrane  regulation of synaptic vesicle exocytosis  regulation of synaptic vesicle exocytosis  
Ontology : EGO-EBIcell junction  regulation of membrane potential  regulation of membrane potential  ion channel binding  ion channel binding  presynaptic active zone  calcium ion-regulated exocytosis of neurotransmitter  synaptic membrane  regulation of synaptic vesicle exocytosis  regulation of synaptic vesicle exocytosis  
NDEx NetworkRIMS4
Atlas of Cancer Signalling NetworkRIMS4
Wikipedia pathwaysRIMS4
Orthology - Evolution
OrthoDB140730
GeneTree (enSembl)ENSG00000101098
Phylogenetic Trees/Animal Genes : TreeFamRIMS4
HOVERGENQ9H426
HOGENOMQ9H426
Homologs : HomoloGeneRIMS4
Homology/Alignments : Family Browser (UCSC)RIMS4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRIMS4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RIMS4
dbVarRIMS4
ClinVarRIMS4
1000_GenomesRIMS4 
Exome Variant ServerRIMS4
ExAC (Exome Aggregation Consortium)RIMS4 (select the gene name)
Genetic variants : HAPMAP140730
Genomic Variants (DGV)RIMS4 [DGVbeta]
DECIPHERRIMS4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRIMS4 
Mutations
ICGC Data PortalRIMS4 
TCGA Data PortalRIMS4 
Broad Tumor PortalRIMS4
OASIS PortalRIMS4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRIMS4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRIMS4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RIMS4
DgiDB (Drug Gene Interaction Database)RIMS4
DoCM (Curated mutations)RIMS4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RIMS4 (select a term)
intoGenRIMS4
Cancer3DRIMS4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611601   
Orphanet
MedgenRIMS4
Genetic Testing Registry RIMS4
NextProtQ9H426 [Medical]
TSGene140730
GENETestsRIMS4
Target ValidationRIMS4
Huge Navigator RIMS4 [HugePedia]
snp3D : Map Gene to Disease140730
BioCentury BCIQRIMS4
ClinGenRIMS4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140730
Chemical/Pharm GKB GenePA25733
Clinical trialRIMS4
Miscellaneous
canSAR (ICR)RIMS4 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRIMS4
EVEXRIMS4
GoPubMedRIMS4
iHOPRIMS4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:38:44 CEST 2017

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