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RIN1 (Ras and Rab interactor 1)

Identity

Other names-
HGNC (Hugo) RIN1
LocusID (NCBI) 9610
Atlas_Id 42116
Location 11q13.2
Location_base_pair Starts at 66099542 and ends at 66104000 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RIN1   18749
Cards
Entrez_Gene (NCBI)RIN1  9610  Ras and Rab interactor 1
GeneCards (Weizmann)RIN1
Ensembl hg19 (Hinxton)ENSG00000174791 [Gene_View]  chr11:66099542-66104000 [Contig_View]  RIN1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000174791 [Gene_View]  chr11:66099542-66104000 [Contig_View]  RIN1 [Vega]
ICGC DataPortalENSG00000174791
TCGA cBioPortalRIN1
AceView (NCBI)RIN1
Genatlas (Paris)RIN1
WikiGenes9610
SOURCE (Princeton)RIN1
Genomic and cartography
GoldenPath hg19 (UCSC)RIN1  -     chr11:66099542-66104000 -  11q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RIN1  -     11q13.2   [Description]    (hg38-Dec_2013)
EnsemblRIN1 - 11q13.2 [CytoView hg19]  RIN1 - 11q13.2 [CytoView hg38]
Mapping of homologs : NCBIRIN1 [Mapview hg19]  RIN1 [Mapview hg38]
OMIM605965   
Gene and transcription
Genbank (Entrez)AB209445 AK295365 AK297757 AK301430 BC014417
RefSeq transcript (Entrez)NM_004292
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)RIN1
Cluster EST : UnigeneHs.1030 [ NCBI ]
CGAP (NCI)Hs.1030
Alternative Splicing : Fast-db (Paris)GSHG0005923
Alternative Splicing GalleryENSG00000174791
Gene ExpressionRIN1 [ NCBI-GEO ]     RIN1 [ SEEK ]   RIN1 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13671 (Uniprot)
NextProtQ13671  [Medical]
With graphics : InterProQ13671
Splice isoforms : SwissVarQ13671 (Swissvar)
Domaine pattern : Prosite (Expaxy)RA (PS50200)    SH2 (PS50001)    VPS9 (PS51205)   
Domains : Interpro (EBI)Ras-assoc    SH2    VPS9    VPS9_subgr   
Related proteins : CluSTrQ13671
Domain families : Pfam (Sanger)RA (PF00788)    VPS9 (PF02204)   
Domain families : Pfam (NCBI)pfam00788    pfam02204   
Domain families : Smart (EMBL)RA (SM00314)  SH2 (SM00252)  VPS9 (SM00167)  
DMDM Disease mutations9610
Blocks (Seattle)Q13671
Human Protein AtlasENSG00000174791
Peptide AtlasQ13671
HPRD05813
IPIIPI00014454   IPI00217761   IPI00909968   IPI00556621   IPI00984613   IPI01008721   IPI00984054   
Protein Interaction databases
DIP (DOE-UCLA)Q13671
IntAct (EBI)Q13671
FunCoupENSG00000174791
BioGRIDRIN1
IntegromeDBRIN1
STRING (EMBL)RIN1
Ontologies - Pathways
QuickGOQ13671
Ontology : AmiGOGTPase activator activity  protein binding  cytoplasm  cytoskeleton  plasma membrane  endocytosis  signal transduction  memory  associative learning  Ras GTPase binding  dendrite  negative regulation of synaptic plasticity  neuronal cell body  positive regulation of GTPase activity  
Ontology : EGO-EBIGTPase activator activity  protein binding  cytoplasm  cytoskeleton  plasma membrane  endocytosis  signal transduction  memory  associative learning  Ras GTPase binding  dendrite  negative regulation of synaptic plasticity  neuronal cell body  positive regulation of GTPase activity  
Pathways : KEGGRas signaling pathway   
Protein Interaction DatabaseRIN1
DoCM (Curated mutations)RIN1
Wikipedia pathwaysRIN1
Gene fusion - Rearrangements
Gene fusion: TCGA
Polymorphisms : SNP, variants
NCBI Variation ViewerRIN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RIN1
dbVarRIN1
ClinVarRIN1
1000_GenomesRIN1 
Exome Variant ServerRIN1
SNP (GeneSNP Utah)RIN1
SNP : HGBaseRIN1
Genetic variants : HAPMAPRIN1
Genomic Variants (DGV)RIN1 [DGVbeta]
Mutations
ICGC Data PortalRIN1 
TCGA Data PortalRIN1 
Tumor PortalRIN1
Somatic Mutations in Cancer : COSMICRIN1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)11:66099542-66104000
CONAN: Copy Number AnalysisRIN1 
Mutations and Diseases : HGMDRIN1
OMIM605965   
MedgenRIN1
NextProtQ13671 [Medical]
GENETestsRIN1
Disease Genetic AssociationRIN1
Huge Navigator RIN1 [HugePedia]  RIN1 [HugeCancerGEM]
snp3D : Map Gene to Disease9610
DGIdb (Drug Gene Interaction db)RIN1
General knowledge
Homologs : HomoloGeneRIN1
Homology/Alignments : Family Browser (UCSC)RIN1
Phylogenetic Trees/Animal Genes : TreeFamRIN1
Chemical/Protein Interactions : CTD9610
Chemical/Pharm GKB GenePA38671
Clinical trialRIN1
Cancer Resource (Charite)ENSG00000174791
Other databases
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
CoreMineRIN1
GoPubMedRIN1
iHOPRIN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Apr 13 15:08:47 CEST 2015

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