Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RIN1 (Ras and Rab interactor 1)

Identity

Other names-
HGNC (Hugo) RIN1
LocusID (NCBI) 9610
Location 11q13.2
Location_base_pair Starts at 66099542 and ends at 66104000 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RIN1   18749
Cards
Entrez_Gene (NCBI)RIN1  9610  Ras and Rab interactor 1
GeneCards (Weizmann)RIN1
Ensembl (Hinxton)ENSG00000174791 [Gene_View]  chr11:66099542-66104000 [Contig_View]  RIN1 [Vega]
ICGC DataPortalENSG00000174791
cBioPortalRIN1
AceView (NCBI)RIN1
Genatlas (Paris)RIN1
WikiGenes9610
SOURCE (Princeton)NM_004292
Genomic and cartography
GoldenPath (UCSC)RIN1  -  11q13.2   chr11:66099542-66104000 -  11q13.2   [Description]    (hg19-Feb_2009)
EnsemblRIN1 - 11q13.2 [CytoView]
Mapping of homologs : NCBIRIN1 [Mapview]
OMIM605965   
Gene and transcription
Genbank (Entrez)AB209445 AK295365 AK297757 AK301430 BC014417
RefSeq transcript (Entrez)NM_004292
RefSeq genomic (Entrez)AC_000143 NC_000011 NC_018922 NT_167190 NW_001838025 NW_004929380
Consensus coding sequences : CCDS (NCBI)RIN1
Cluster EST : UnigeneHs.1030 [ NCBI ]
CGAP (NCI)Hs.1030
Alternative Splicing : Fast-db (Paris)GSHG0005923
Alternative Splicing GalleryENSG00000174791
Gene ExpressionRIN1 [ NCBI-GEO ]     RIN1 [ SEEK ]   RIN1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13671 (Uniprot)
NextProtQ13671  [Medical]
With graphics : InterProQ13671
Splice isoforms : SwissVarQ13671 (Swissvar)
Domaine pattern : Prosite (Expaxy)RA (PS50200)    SH2 (PS50001)    VPS9 (PS51205)   
Domains : Interpro (EBI)Ras-assoc [organisation]   SH2 [organisation]   VPS9 [organisation]   VPS9_subgr [organisation]  
Related proteins : CluSTrQ13671
Domain families : Pfam (Sanger)RA (PF00788)    VPS9 (PF02204)   
Domain families : Pfam (NCBI)pfam00788    pfam02204   
Domain families : Smart (EMBL)RA (SM00314)  SH2 (SM00252)  VPS9 (SM00167)  
DMDM Disease mutations9610
Blocks (Seattle)Q13671
Human Protein AtlasENSG00000174791 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ13671
HPRD05813
IPIIPI00014454   IPI00217761   IPI00909968   IPI00556621   IPI00984613   IPI01008721   IPI00984054   
Protein Interaction databases
DIP (DOE-UCLA)Q13671
IntAct (EBI)Q13671
FunCoupENSG00000174791
BioGRIDRIN1
InParanoidQ13671
Interologous Interaction database Q13671
IntegromeDBRIN1
STRING (EMBL)RIN1
Ontologies - Pathways
Ontology : AmiGOGTPase activator activity  protein binding  cytoplasm  cytoskeleton  plasma membrane  endocytosis  signal transduction  
Ontology : EGO-EBIGTPase activator activity  protein binding  cytoplasm  cytoskeleton  plasma membrane  endocytosis  signal transduction  
Pathways : KEGGRas signaling pathway   
Protein Interaction DatabaseRIN1
Wikipedia pathwaysRIN1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)RIN1
snp3D : Map Gene to Disease9610
SNP (GeneSNP Utah)RIN1
SNP : HGBaseRIN1
Genetic variants : HAPMAPRIN1
Exome VariantRIN1
1000_GenomesRIN1 
ICGC programENSG00000174791 
Somatic Mutations in Cancer : COSMICRIN1 
CONAN: Copy Number AnalysisRIN1 
Mutations and Diseases : HGMDRIN1
Genomic VariantsRIN1  RIN1 [DGVbeta]
dbVarRIN1
ClinVarRIN1
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM605965   
MedgenRIN1
GENETestsRIN1
Disease Genetic AssociationRIN1
Huge Navigator RIN1 [HugePedia]  RIN1 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneRIN1
Homology/Alignments : Family Browser (UCSC)RIN1
Phylogenetic Trees/Animal Genes : TreeFamRIN1
Chemical/Protein Interactions : CTD9610
Chemical/Pharm GKB GenePA38671
Clinical trialRIN1
Cancer Resource (Charite)ENSG00000174791
Other databases
Probes
Litterature
PubMed39 Pubmed reference(s) in Entrez
CoreMineRIN1
iHOPRIN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jul 11 17:16:50 CEST 2014

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.