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RIN1 (Ras and Rab interactor 1)

Identity

Other names-
HGNC (Hugo) RIN1
LocusID (NCBI) 9610
Atlas_Id 42116
Location 11q13.2
Location_base_pair Starts at 66099542 and ends at 66104000 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SDHAF2 (11q12.2) / RIN1 (11q13.2)SDHAF2 11q12.2 / RIN1 11q13.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RIN1   18749
Cards
Entrez_Gene (NCBI)RIN1  9610  Ras and Rab interactor 1
Aliases
GeneCards (Weizmann)RIN1
Ensembl hg19 (Hinxton)ENSG00000174791 [Gene_View]  chr11:66099542-66104000 [Contig_View]  RIN1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000174791 [Gene_View]  chr11:66099542-66104000 [Contig_View]  RIN1 [Vega]
ICGC DataPortalENSG00000174791
TCGA cBioPortalRIN1
AceView (NCBI)RIN1
Genatlas (Paris)RIN1
WikiGenes9610
SOURCE (Princeton)RIN1
Genomic and cartography
GoldenPath hg19 (UCSC)RIN1  -     chr11:66099542-66104000 -  11q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RIN1  -     11q13.2   [Description]    (hg38-Dec_2013)
EnsemblRIN1 - 11q13.2 [CytoView hg19]  RIN1 - 11q13.2 [CytoView hg38]
Mapping of homologs : NCBIRIN1 [Mapview hg19]  RIN1 [Mapview hg38]
OMIM605965   
Gene and transcription
Genbank (Entrez)AB209445 AK295365 AK297757 AK301430 BC014417
RefSeq transcript (Entrez)NM_004292
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)RIN1
Cluster EST : UnigeneHs.1030 [ NCBI ]
CGAP (NCI)Hs.1030
Alternative Splicing GalleryENSG00000174791
Gene ExpressionRIN1 [ NCBI-GEO ]   RIN1 [ EBI - ARRAY_EXPRESS ]   RIN1 [ SEEK ]   RIN1 [ MEM ]
Gene Expression Viewer (FireBrowse)RIN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9610
GTEX Portal (Tissue expression)RIN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13671 (Uniprot)
NextProtQ13671  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13671
Splice isoforms : SwissVarQ13671 (Swissvar)
PhosPhoSitePlusQ13671
Domaine pattern : Prosite (Expaxy)RA (PS50200)    SH2 (PS50001)    VPS9 (PS51205)   
Domains : Interpro (EBI)RA_dom    SH2    VPS9   
Domain families : Pfam (Sanger)RA (PF00788)    VPS9 (PF02204)   
Domain families : Pfam (NCBI)pfam00788    pfam02204   
Domain families : Smart (EMBL)RA (SM00314)  SH2 (SM00252)  VPS9 (SM00167)  
DMDM Disease mutations9610
Blocks (Seattle)RIN1
SuperfamilyQ13671
Human Protein AtlasENSG00000174791
Peptide AtlasQ13671
HPRD05813
IPIIPI00014454   IPI00217761   IPI00909968   IPI00556621   IPI00984613   IPI01008721   IPI00984054   
Protein Interaction databases
DIP (DOE-UCLA)Q13671
IntAct (EBI)Q13671
FunCoupENSG00000174791
BioGRIDRIN1
STRING (EMBL)RIN1
ZODIACRIN1
Ontologies - Pathways
QuickGOQ13671
Ontology : AmiGOGTPase activator activity  protein binding  cytoplasm  cytoskeleton  plasma membrane  endocytosis  signal transduction  memory  associative learning  Ras GTPase binding  dendrite  negative regulation of synaptic plasticity  neuronal cell body  positive regulation of GTPase activity  
Ontology : EGO-EBIGTPase activator activity  protein binding  cytoplasm  cytoskeleton  plasma membrane  endocytosis  signal transduction  memory  associative learning  Ras GTPase binding  dendrite  negative regulation of synaptic plasticity  neuronal cell body  positive regulation of GTPase activity  
Pathways : KEGGRas signaling pathway   
NDEx Network
Atlas of Cancer Signalling NetworkRIN1
Wikipedia pathwaysRIN1
Orthology - Evolution
OrthoDB9610
GeneTree (enSembl)ENSG00000174791
Phylogenetic Trees/Animal Genes : TreeFamRIN1
Homologs : HomoloGeneRIN1
Homology/Alignments : Family Browser (UCSC)RIN1
Gene fusions - Rearrangements
Fusion: TCGASDHAF2 11q12.2 RIN1 11q13.2 BRCA
Polymorphisms : SNP, variants
NCBI Variation ViewerRIN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RIN1
dbVarRIN1
ClinVarRIN1
1000_GenomesRIN1 
Exome Variant ServerRIN1
ExAC (Exome Aggregation Consortium)RIN1 (select the gene name)
Genetic variants : HAPMAP9610
Genomic Variants (DGV)RIN1 [DGVbeta]
Mutations
ICGC Data PortalRIN1 
TCGA Data PortalRIN1 
Broad Tumor PortalRIN1
OASIS PortalRIN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRIN1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RIN1
DgiDB (Drug Gene Interaction Database)RIN1
DoCM (Curated mutations)RIN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RIN1 (select a term)
intoGenRIN1
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)11:66099542-66104000  ENSG00000174791
CONAN: Copy Number AnalysisRIN1 
Mutations and Diseases : HGMDRIN1
OMIM605965   
MedgenRIN1
Genetic Testing Registry RIN1
NextProtQ13671 [Medical]
TSGene9610
GENETestsRIN1
Huge Navigator RIN1 [HugePedia]
snp3D : Map Gene to Disease9610
BioCentury BCIQRIN1
ClinGenRIN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9610
Chemical/Pharm GKB GenePA38671
Clinical trialRIN1
Miscellaneous
canSAR (ICR)RIN1 (select the gene name)
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRIN1
EVEXRIN1
GoPubMedRIN1
iHOPRIN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat May 28 11:18:59 CEST 2016

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