Atlas of Genetics and Cytogenetics in Oncology and Haematology

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RING1 (ring finger protein 1)

Identity

Alias (NCBI)RING1A
RNF1
HGNC (Hugo) RING1
HGNC Alias symbRNF1
LocusID (NCBI) 6015
Atlas_Id 42117
Location 6p21.32  [Link to chromosome band 6p21]
Location_base_pair Starts at 33208500 and ends at 33212715 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RING1 (6p21.32) / RING1 (6p21.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RING1   10018
Cards
Entrez_Gene (NCBI)RING1  6015  ring finger protein 1
AliasesRING1A; RNF1
GeneCards (Weizmann)RING1
Ensembl hg19 (Hinxton)ENSG00000204227 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204227 [Gene_View]  ENSG00000204227 [Sequence]  chr6:33208500-33212715 [Contig_View]  RING1 [Vega]
ICGC DataPortalENSG00000204227
TCGA cBioPortalRING1
AceView (NCBI)RING1
Genatlas (Paris)RING1
WikiGenes6015
SOURCE (Princeton)RING1
Genetics Home Reference (NIH)RING1
Genomic and cartography
GoldenPath hg38 (UCSC)RING1  -     chr6:33208500-33212715 +  6p21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RING1  -     6p21.32   [Description]    (hg19-Feb_2009)
GoldenPathRING1 - 6p21.32 [CytoView hg19]  RING1 - 6p21.32 [CytoView hg38]
ImmunoBaseENSG00000204227
genome Data Viewer NCBIRING1 [Mapview hg19]  
OMIM602045   
Gene and transcription
Genbank (Entrez)AI828228 AK289355 AK297552 AK301010 AK301378
RefSeq transcript (Entrez)NM_002931
RefSeq genomic (Entrez)NC_000006 NT_113891 NT_167245 NT_167246 NT_167247 NT_167248
Consensus coding sequences : CCDS (NCBI)RING1
Alternative Splicing GalleryENSG00000204227
Gene ExpressionRING1 [ NCBI-GEO ]   RING1 [ EBI - ARRAY_EXPRESS ]   RING1 [ SEEK ]   RING1 [ MEM ]
Gene Expression Viewer (FireBrowse)RING1 [ Firebrowse - Broad ]
GenevisibleExpression of RING1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6015
GTEX Portal (Tissue expression)RING1
Human Protein AtlasENSG00000204227-RING1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ06587   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ06587  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ06587
Splice isoforms : SwissVarQ06587
Catalytic activity : Enzyme2.3.2.27 [ Enzyme-Expasy ]   2.3.2.272.3.2.27 [ IntEnz-EBI ]   2.3.2.27 [ BRENDA ]   2.3.2.27 [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ06587
Domaine pattern : Prosite (Expaxy)ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)RAWUL    RING1    RING1_RING-HC    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)RAWUL (PF16207)   
Domain families : Pfam (NCBI)pfam16207   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)RING1
DMDM Disease mutations6015
Blocks (Seattle)RING1
SuperfamilyQ06587
Human Protein Atlas [tissue]ENSG00000204227-RING1 [tissue]
Peptide AtlasQ06587
HPRD03624
IPIIPI00641330   IPI00455876   IPI00909995   IPI00908464   
Protein Interaction databases
DIP (DOE-UCLA)Q06587
IntAct (EBI)Q06587
FunCoupENSG00000204227
BioGRIDRING1
STRING (EMBL)RING1
ZODIACRING1
Ontologies - Pathways
QuickGOQ06587
Ontology : AmiGOubiquitin ligase complex  sex chromatin  chromatin binding  protein binding  nucleus  nucleoplasm  nucleoplasm  cytosol  anterior/posterior pattern specification  nuclear speck  PcG protein complex  PcG protein complex  PRC1 complex  histone H2A monoubiquitination  histone H2A monoubiquitination  negative regulation of transcription, DNA-templated  negative regulation of transcription, DNA-templated  metal ion binding  camera-type eye morphogenesis  regulation of catalytic activity  ubiquitin protein ligase activity  negative regulation of G0 to G1 transition  ubiquitin-protein transferase activator activity  
Ontology : EGO-EBIubiquitin ligase complex  sex chromatin  chromatin binding  protein binding  nucleus  nucleoplasm  nucleoplasm  cytosol  anterior/posterior pattern specification  nuclear speck  PcG protein complex  PcG protein complex  PRC1 complex  histone H2A monoubiquitination  histone H2A monoubiquitination  negative regulation of transcription, DNA-templated  negative regulation of transcription, DNA-templated  metal ion binding  camera-type eye morphogenesis  regulation of catalytic activity  ubiquitin protein ligase activity  negative regulation of G0 to G1 transition  ubiquitin-protein transferase activator activity  
NDEx NetworkRING1
Atlas of Cancer Signalling NetworkRING1
Wikipedia pathwaysRING1
Orthology - Evolution
OrthoDB6015
GeneTree (enSembl)ENSG00000204227
Phylogenetic Trees/Animal Genes : TreeFamRING1
HOGENOMQ06587
Homologs : HomoloGeneRING1
Homology/Alignments : Family Browser (UCSC)RING1
Gene fusions - Rearrangements
Fusion : QuiverRING1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRING1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RING1
dbVarRING1
ClinVarRING1
MonarchRING1
1000_GenomesRING1 
Exome Variant ServerRING1
GNOMAD BrowserENSG00000204227
Varsome BrowserRING1
Genetic variants : HAPMAP6015
Genomic Variants (DGV)RING1 [DGVbeta]
DECIPHERRING1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRING1 
Mutations
ICGC Data PortalRING1 
TCGA Data PortalRING1 
Broad Tumor PortalRING1
OASIS PortalRING1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRING1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRING1
Mutations and Diseases : HGMDRING1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RING1
DgiDB (Drug Gene Interaction Database)RING1
DoCM (Curated mutations)RING1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RING1 (select a term)
intoGenRING1
Cancer3DRING1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602045   
Orphanet
DisGeNETRING1
MedgenRING1
Genetic Testing Registry RING1
NextProtQ06587 [Medical]
TSGene6015
GENETestsRING1
Target ValidationRING1
Huge Navigator RING1 [HugePedia]
snp3D : Map Gene to Disease6015
BioCentury BCIQRING1
ClinGenRING1
Clinical trials, drugs, therapy
Protein Interactions : CTD6015
Pharm GKB GenePA34393
Clinical trialRING1
Miscellaneous
canSAR (ICR)RING1 (select the gene name)
HarmonizomeRING1
DataMed IndexRING1
Probes
Litterature
PubMed107 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRING1
EVEXRING1
GoPubMedRING1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 14 14:30:21 CEST 2020
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